Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 AL157888.1-201ENST00000631930 593 ntBASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TCRBV7S3A2A0A539 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TCRBV7S3A2A0A539 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 HMGA1P5-201ENST00000412453 271 ntBASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 AL596275.1-201ENST00000423464 877 ntBASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 PCDHA12-202ENST00000613593 2588 ntBASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.36■□□□□ 0.53
TCRBV7S3A2A0A539 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms