Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF541Q9H0D2 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF541Q9H0D2 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF541Q9H0D2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.56■■□□□ 1.04
ZNF541Q9H0D2 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.56■■□□□ 1.04
ZNF541Q9H0D2 AL032819.2-201ENST00000624543 2162 ntBASIC21.56■■□□□ 1.04
ZNF541Q9H0D2 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
ZNF541Q9H0D2 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.56■■□□□ 1.04
ZNF541Q9H0D2 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
ZNF541Q9H0D2 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 PTMS-202ENST00000389462 773 ntTSL 2 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 METTL23-205ENST00000588302 925 ntTSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 AC093512.1-201ENST00000617969 520 ntBASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 HLA-J-203ENST00000494367 1087 ntBASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 IGHV3-65-201ENST00000523210 341 ntBASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 AC004790.2-201ENST00000623588 572 ntBASIC21.55■■□□□ 1.04
ZNF541Q9H0D2 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 AC073130.3-201ENST00000624389 2278 ntBASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 RNF34-208ENST00000555076 593 ntTSL 3 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 CYB561-217ENST00000582997 877 ntTSL 5 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ZNF541Q9H0D2 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 AC122714.2-201ENST00000502787 707 ntBASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms