Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.76■■□□□ 1.88
CDX2Q99626 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CDX2Q99626 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.76■■□□□ 1.87
CDX2Q99626 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.76■■□□□ 1.87
CDX2Q99626 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.76■■□□□ 1.87
CDX2Q99626 TK2-216ENST00000564917 1156 ntTSL 3 BASIC26.76■■□□□ 1.87
CDX2Q99626 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC26.76■■□□□ 1.87
CDX2Q99626 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CDX2Q99626 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.75■■□□□ 1.87
CDX2Q99626 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
CDX2Q99626 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.75■■□□□ 1.87
CDX2Q99626 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC26.75■■□□□ 1.87
CDX2Q99626 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
CDX2Q99626 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CDX2Q99626 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC26.73■■□□□ 1.87
CDX2Q99626 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC26.73■■□□□ 1.87
CDX2Q99626 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
CDX2Q99626 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CDX2Q99626 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
CDX2Q99626 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.72■■□□□ 1.87
CDX2Q99626 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.72■■□□□ 1.87
CDX2Q99626 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.72■■□□□ 1.87
CDX2Q99626 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
CDX2Q99626 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.71■■□□□ 1.87
CDX2Q99626 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC26.71■■□□□ 1.87
CDX2Q99626 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CDX2Q99626 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.87
CDX2Q99626 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.7■■□□□ 1.87
CDX2Q99626 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
CDX2Q99626 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
CDX2Q99626 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
CDX2Q99626 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
CDX2Q99626 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.69■■□□□ 1.86
CDX2Q99626 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.68■■□□□ 1.86
CDX2Q99626 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CDX2Q99626 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CDX2Q99626 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CDX2Q99626 LONRF2P2-201ENST00000439212 571 ntBASIC26.67■■□□□ 1.86
CDX2Q99626 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
CDX2Q99626 MIR3960-201ENST00000583311 91 ntBASIC26.67■■□□□ 1.86
CDX2Q99626 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.67■■□□□ 1.86
CDX2Q99626 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CDX2Q99626 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CDX2Q99626 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CDX2Q99626 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
CDX2Q99626 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.66■■□□□ 1.86
CDX2Q99626 UNC93B8-201ENST00000511903 705 ntBASIC26.66■■□□□ 1.86
CDX2Q99626 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CDX2Q99626 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.65■■□□□ 1.86
CDX2Q99626 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.65■■□□□ 1.86
CDX2Q99626 KRT125P-201ENST00000546827 989 ntBASIC26.65■■□□□ 1.86
CDX2Q99626 MIR4787-201ENST00000607364 84 ntBASIC26.65■■□□□ 1.86
CDX2Q99626 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26.65■■□□□ 1.86
CDX2Q99626 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
CDX2Q99626 KRT16P3-201ENST00000439127 1283 ntBASIC26.64■■□□□ 1.86
CDX2Q99626 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.63■■□□□ 1.85
CDX2Q99626 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
CDX2Q99626 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.63■■□□□ 1.85
CDX2Q99626 AC019171.1-201ENST00000601251 1056 ntBASIC26.63■■□□□ 1.85
CDX2Q99626 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.63■■□□□ 1.85
CDX2Q99626 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CDX2Q99626 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CDX2Q99626 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
CDX2Q99626 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
CDX2Q99626 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CDX2Q99626 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CDX2Q99626 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.61■■□□□ 1.85
CDX2Q99626 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CDX2Q99626 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.61■■□□□ 1.85
CDX2Q99626 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.61■■□□□ 1.85
CDX2Q99626 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.61■■□□□ 1.85
CDX2Q99626 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC26.61■■□□□ 1.85
CDX2Q99626 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CDX2Q99626 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CDX2Q99626 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
CDX2Q99626 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CDX2Q99626 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
CDX2Q99626 AC005837.3-201ENST00000612163 286 ntBASIC26.6■■□□□ 1.85
CDX2Q99626 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CDX2Q99626 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
CDX2Q99626 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
CDX2Q99626 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
CDX2Q99626 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CDX2Q99626 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
CDX2Q99626 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
CDX2Q99626 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CDX2Q99626 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CDX2Q99626 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CDX2Q99626 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CDX2Q99626 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CDX2Q99626 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CDX2Q99626 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CDX2Q99626 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC26.56■■□□□ 1.84
CDX2Q99626 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.56■■□□□ 1.84
CDX2Q99626 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
CDX2Q99626 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
CDX2Q99626 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CDX2Q99626 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CDX2Q99626 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.55■■□□□ 1.84
CDX2Q99626 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.55■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms