Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LINC00477Q96M19 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LINC00477Q96M19 DUSP8P4-201ENST00000399538 1761 ntBASIC18.4■□□□□ 0.54
LINC00477Q96M19 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LINC00477Q96M19 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LINC00477Q96M19 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.4■□□□□ 0.54
LINC00477Q96M19 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LINC00477Q96M19 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LINC00477Q96M19 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC18.39■□□□□ 0.53
LINC00477Q96M19 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LINC00477Q96M19 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LINC00477Q96M19 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LINC00477Q96M19 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC18.38■□□□□ 0.53
LINC00477Q96M19 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LINC00477Q96M19 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LINC00477Q96M19 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LINC00477Q96M19 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LINC00477Q96M19 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LINC00477Q96M19 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.37■□□□□ 0.53
LINC00477Q96M19 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LINC00477Q96M19 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LINC00477Q96M19 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LINC00477Q96M19 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LINC00477Q96M19 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC18.36■□□□□ 0.53
LINC00477Q96M19 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LINC00477Q96M19 CHML-204ENST00000638121 920 ntTSL 2 BASIC18.35■□□□□ 0.53
LINC00477Q96M19 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
LINC00477Q96M19 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LINC00477Q96M19 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LINC00477Q96M19 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LINC00477Q96M19 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LINC00477Q96M19 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC00477Q96M19 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC00477Q96M19 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.34■□□□□ 0.53
LINC00477Q96M19 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.34■□□□□ 0.53
LINC00477Q96M19 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LINC00477Q96M19 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.34■□□□□ 0.53
LINC00477Q96M19 LINC01971-201ENST00000617888 1048 ntBASIC18.34■□□□□ 0.53
LINC00477Q96M19 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LINC00477Q96M19 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LINC00477Q96M19 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LINC00477Q96M19 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.33■□□□□ 0.53
LINC00477Q96M19 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LINC00477Q96M19 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LINC00477Q96M19 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
LINC00477Q96M19 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LINC00477Q96M19 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.33■□□□□ 0.52
LINC00477Q96M19 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LINC00477Q96M19 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LINC00477Q96M19 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LINC00477Q96M19 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LINC00477Q96M19 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
LINC00477Q96M19 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC00477Q96M19 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LINC00477Q96M19 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 AC008813.1-201ENST00000536597 885 ntBASIC18.31■□□□□ 0.52
LINC00477Q96M19 HGH1-207ENST00000628266 258 ntTSL 5 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LINC00477Q96M19 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LINC00477Q96M19 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LINC00477Q96M19 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
LINC00477Q96M19 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LINC00477Q96M19 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LINC00477Q96M19 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC18.3■□□□□ 0.52
LINC00477Q96M19 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LINC00477Q96M19 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
LINC00477Q96M19 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LINC00477Q96M19 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC18.29■□□□□ 0.52
LINC00477Q96M19 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC18.29■□□□□ 0.52
LINC00477Q96M19 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.29■□□□□ 0.52
LINC00477Q96M19 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LINC00477Q96M19 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LINC00477Q96M19 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LINC00477Q96M19 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LINC00477Q96M19 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LINC00477Q96M19 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LINC00477Q96M19 DUX4L13-201ENST00000554103 1267 ntBASIC18.28■□□□□ 0.52
LINC00477Q96M19 DUX4L15-201ENST00000611059 1267 ntBASIC18.28■□□□□ 0.52
LINC00477Q96M19 DUX4L23-201ENST00000615195 1269 ntBASIC18.28■□□□□ 0.52
LINC00477Q96M19 DUX4L24-201ENST00000617576 1269 ntBASIC18.28■□□□□ 0.52
LINC00477Q96M19 DUX4L22-201ENST00000618238 1269 ntBASIC18.28■□□□□ 0.52
LINC00477Q96M19 DUX4L20-201ENST00000619712 1269 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms