Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLRN3Q8NCR9 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CLRN3Q8NCR9 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLRN3Q8NCR9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLRN3Q8NCR9 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLRN3Q8NCR9 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLRN3Q8NCR9 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLRN3Q8NCR9 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLRN3Q8NCR9 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLRN3Q8NCR9 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLRN3Q8NCR9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CLRN3Q8NCR9 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLRN3Q8NCR9 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLRN3Q8NCR9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.74■□□□□ 0.75
CLRN3Q8NCR9 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CLRN3Q8NCR9 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLRN3Q8NCR9 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.73■□□□□ 0.75
CLRN3Q8NCR9 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CLRN3Q8NCR9 INO80B-203ENST00000409917 796 ntTSL 2 BASIC19.73■□□□□ 0.75
CLRN3Q8NCR9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLRN3Q8NCR9 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
CLRN3Q8NCR9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLRN3Q8NCR9 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CLRN3Q8NCR9 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLRN3Q8NCR9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLRN3Q8NCR9 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC19.7■□□□□ 0.74
CLRN3Q8NCR9 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
CLRN3Q8NCR9 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLRN3Q8NCR9 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLRN3Q8NCR9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLRN3Q8NCR9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLRN3Q8NCR9 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLRN3Q8NCR9 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.69■□□□□ 0.74
CLRN3Q8NCR9 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CLRN3Q8NCR9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.68■□□□□ 0.74
CLRN3Q8NCR9 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLRN3Q8NCR9 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CLRN3Q8NCR9 AC092803.2-201ENST00000564287 1899 ntBASIC19.66■□□□□ 0.74
CLRN3Q8NCR9 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLRN3Q8NCR9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.66■□□□□ 0.74
CLRN3Q8NCR9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.66■□□□□ 0.74
CLRN3Q8NCR9 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.66■□□□□ 0.74
CLRN3Q8NCR9 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN3Q8NCR9 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN3Q8NCR9 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN3Q8NCR9 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLRN3Q8NCR9 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CLRN3Q8NCR9 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLRN3Q8NCR9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLRN3Q8NCR9 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLRN3Q8NCR9 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLRN3Q8NCR9 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN3Q8NCR9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN3Q8NCR9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLRN3Q8NCR9 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN3Q8NCR9 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN3Q8NCR9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLRN3Q8NCR9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.63■□□□□ 0.73
CLRN3Q8NCR9 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.63■□□□□ 0.73
CLRN3Q8NCR9 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.62■□□□□ 0.73
CLRN3Q8NCR9 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.62■□□□□ 0.73
CLRN3Q8NCR9 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CLRN3Q8NCR9 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLRN3Q8NCR9 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN3Q8NCR9 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.6■□□□□ 0.73
CLRN3Q8NCR9 MVK-208ENST00000539696 608 ntTSL 5 BASIC19.6■□□□□ 0.73
CLRN3Q8NCR9 AC015813.7-201ENST00000623294 581 ntBASIC19.6■□□□□ 0.73
CLRN3Q8NCR9 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CLRN3Q8NCR9 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN3Q8NCR9 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN3Q8NCR9 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN3Q8NCR9 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CLRN3Q8NCR9 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.59■□□□□ 0.73
CLRN3Q8NCR9 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CLRN3Q8NCR9 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CLRN3Q8NCR9 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLRN3Q8NCR9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CLRN3Q8NCR9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms