Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC28AQ8IWP9 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC28AQ8IWP9 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC28AQ8IWP9 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28AQ8IWP9 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC28AQ8IWP9 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28AQ8IWP9 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28AQ8IWP9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC28AQ8IWP9 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC28AQ8IWP9 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC28AQ8IWP9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC28AQ8IWP9 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.52■□□□□ 0.87
CCDC28AQ8IWP9 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC28AQ8IWP9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC28AQ8IWP9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28AQ8IWP9 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CCDC28AQ8IWP9 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28AQ8IWP9 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC28AQ8IWP9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC28AQ8IWP9 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC28AQ8IWP9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC28AQ8IWP9 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28AQ8IWP9 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28AQ8IWP9 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28AQ8IWP9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28AQ8IWP9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28AQ8IWP9 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC28AQ8IWP9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28AQ8IWP9 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC28AQ8IWP9 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28AQ8IWP9 ERN1-208ENST00000606895 2068 ntBASIC20.49■□□□□ 0.87
CCDC28AQ8IWP9 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28AQ8IWP9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC28AQ8IWP9 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC28AQ8IWP9 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC28AQ8IWP9 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC28AQ8IWP9 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC28AQ8IWP9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC28AQ8IWP9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC28AQ8IWP9 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.46■□□□□ 0.87
CCDC28AQ8IWP9 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28AQ8IWP9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28AQ8IWP9 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28AQ8IWP9 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28AQ8IWP9 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28AQ8IWP9 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC28AQ8IWP9 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC28AQ8IWP9 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.45■□□□□ 0.87
CCDC28AQ8IWP9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28AQ8IWP9 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
CCDC28AQ8IWP9 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC28AQ8IWP9 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CCDC28AQ8IWP9 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28AQ8IWP9 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28AQ8IWP9 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC28AQ8IWP9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CCDC28AQ8IWP9 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28AQ8IWP9 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.43■□□□□ 0.86
CCDC28AQ8IWP9 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28AQ8IWP9 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28AQ8IWP9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28AQ8IWP9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC28AQ8IWP9 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28AQ8IWP9 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28AQ8IWP9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28AQ8IWP9 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28AQ8IWP9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC28AQ8IWP9 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CCDC28AQ8IWP9 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28AQ8IWP9 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC28AQ8IWP9 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28AQ8IWP9 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC28AQ8IWP9 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28AQ8IWP9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28AQ8IWP9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28AQ8IWP9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CCDC28AQ8IWP9 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC28AQ8IWP9 SLC25A24-204ENST00000569674 2357 ntBASIC20.41■□□□□ 0.86
CCDC28AQ8IWP9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28AQ8IWP9 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28AQ8IWP9 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28AQ8IWP9 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC28AQ8IWP9 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC28AQ8IWP9 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CCDC28AQ8IWP9 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC28AQ8IWP9 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC28AQ8IWP9 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
CCDC28AQ8IWP9 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC28AQ8IWP9 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28AQ8IWP9 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28AQ8IWP9 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28AQ8IWP9 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC20.39■□□□□ 0.85
CCDC28AQ8IWP9 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28AQ8IWP9 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC28AQ8IWP9 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28AQ8IWP9 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
CCDC28AQ8IWP9 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC28AQ8IWP9 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CCDC28AQ8IWP9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC28AQ8IWP9 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms