Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.95■□□□□ 0.94
PDLIM4P50479 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.95■□□□□ 0.94
PDLIM4P50479 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.95■□□□□ 0.94
PDLIM4P50479 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.95■□□□□ 0.94
PDLIM4P50479 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM4P50479 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM4P50479 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM4P50479 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM4P50479 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM4P50479 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.94■□□□□ 0.94
PDLIM4P50479 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM4P50479 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PDLIM4P50479 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM4P50479 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM4P50479 AC009831.1-201ENST00000580420 1582 ntBASIC20.93■□□□□ 0.94
PDLIM4P50479 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM4P50479 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.93■□□□□ 0.94
PDLIM4P50479 AL592293.1-201ENST00000502889 1188 ntBASIC20.93■□□□□ 0.94
PDLIM4P50479 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM4P50479 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM4P50479 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.93■□□□□ 0.94
PDLIM4P50479 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM4P50479 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
PDLIM4P50479 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PDLIM4P50479 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PDLIM4P50479 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PDLIM4P50479 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.92■□□□□ 0.94
PDLIM4P50479 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM4P50479 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.92■□□□□ 0.94
PDLIM4P50479 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.92■□□□□ 0.94
PDLIM4P50479 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PDLIM4P50479 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PDLIM4P50479 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PDLIM4P50479 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM4P50479 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM4P50479 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM4P50479 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM4P50479 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.91■□□□□ 0.94
PDLIM4P50479 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM4P50479 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.91■□□□□ 0.94
PDLIM4P50479 AC025884.2-201ENST00000553429 711 ntBASIC20.91■□□□□ 0.94
PDLIM4P50479 AC129492.7-201ENST00000622992 756 ntBASIC20.91■□□□□ 0.94
PDLIM4P50479 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM4P50479 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM4P50479 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM4P50479 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM4P50479 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PDLIM4P50479 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
PDLIM4P50479 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.9■□□□□ 0.94
PDLIM4P50479 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM4P50479 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
PDLIM4P50479 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PDLIM4P50479 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PDLIM4P50479 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.89■□□□□ 0.93
PDLIM4P50479 RP9P-202ENST00000450133 1212 ntBASIC20.89■□□□□ 0.93
PDLIM4P50479 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDLIM4P50479 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDLIM4P50479 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDLIM4P50479 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.89■□□□□ 0.93
PDLIM4P50479 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PDLIM4P50479 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PDLIM4P50479 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PDLIM4P50479 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PDLIM4P50479 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM4P50479 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM4P50479 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM4P50479 AC026202.3-201ENST00000600805 1127 ntBASIC20.87■□□□□ 0.93
PDLIM4P50479 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM4P50479 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PDLIM4P50479 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.86■□□□□ 0.93
PDLIM4P50479 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM4P50479 DUX4L18-201ENST00000553347 1267 ntBASIC20.86■□□□□ 0.93
PDLIM4P50479 MIR3960-201ENST00000583311 91 ntBASIC20.86■□□□□ 0.93
PDLIM4P50479 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.86■□□□□ 0.93
PDLIM4P50479 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.86■□□□□ 0.93
PDLIM4P50479 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM4P50479 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.85■□□□□ 0.93
PDLIM4P50479 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
PDLIM4P50479 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.85■□□□□ 0.93
PDLIM4P50479 AC093536.1-201ENST00000569153 554 ntBASIC20.85■□□□□ 0.93
PDLIM4P50479 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM4P50479 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
PDLIM4P50479 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM4P50479 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PDLIM4P50479 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.84■□□□□ 0.93
PDLIM4P50479 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM4P50479 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM4P50479 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM4P50479 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM4P50479 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM4P50479 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.83■□□□□ 0.92
PDLIM4P50479 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.83■□□□□ 0.92
PDLIM4P50479 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.82■□□□□ 0.92
PDLIM4P50479 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PDLIM4P50479 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.82■□□□□ 0.92
PDLIM4P50479 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PDLIM4P50479 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM4P50479 RARRES2P1-201ENST00000474487 481 ntBASIC20.81■□□□□ 0.92
PDLIM4P50479 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM4P50479 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms