Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RNF40O75150 CEP120-209ENST00000515110 606 ntTSL 3 BASIC26.41■■□□□ 1.82
RNF40O75150 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
RNF40O75150 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.41■■□□□ 1.82
RNF40O75150 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
RNF40O75150 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.4■■□□□ 1.82
RNF40O75150 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
RNF40O75150 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
RNF40O75150 RNF126P1-201ENST00000567452 1320 ntBASIC26.39■■□□□ 1.82
RNF40O75150 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
RNF40O75150 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
RNF40O75150 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.81
RNF40O75150 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
RNF40O75150 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF40O75150 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
RNF40O75150 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
RNF40O75150 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.37■■□□□ 1.81
RNF40O75150 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
RNF40O75150 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
RNF40O75150 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
RNF40O75150 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
RNF40O75150 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
RNF40O75150 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF40O75150 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
RNF40O75150 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
RNF40O75150 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC26.35■■□□□ 1.81
RNF40O75150 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.35■■□□□ 1.81
RNF40O75150 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.35■■□□□ 1.81
RNF40O75150 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
RNF40O75150 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
RNF40O75150 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
RNF40O75150 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.34■■□□□ 1.81
RNF40O75150 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
RNF40O75150 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
RNF40O75150 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
RNF40O75150 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF40O75150 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF40O75150 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
RNF40O75150 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF40O75150 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.33■■□□□ 1.81
RNF40O75150 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
RNF40O75150 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RNF40O75150 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.33■■□□□ 1.8
RNF40O75150 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.8
RNF40O75150 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.33■■□□□ 1.8
RNF40O75150 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
RNF40O75150 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RNF40O75150 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
RNF40O75150 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.31■■□□□ 1.8
RNF40O75150 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.31■■□□□ 1.8
RNF40O75150 AC127502.1-201ENST00000399971 1502 ntBASIC26.31■■□□□ 1.8
RNF40O75150 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF40O75150 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.31■■□□□ 1.8
RNF40O75150 AC022413.1-201ENST00000624602 984 ntBASIC26.31■■□□□ 1.8
RNF40O75150 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF40O75150 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
RNF40O75150 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC26.31■■□□□ 1.8
RNF40O75150 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
RNF40O75150 AC091060.1-201ENST00000623524 1766 ntBASIC26.3■■□□□ 1.8
RNF40O75150 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC26.3■■□□□ 1.8
RNF40O75150 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
RNF40O75150 AC020928.2-201ENST00000588717 2197 ntBASIC26.29■■□□□ 1.8
RNF40O75150 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC26.29■■□□□ 1.8
RNF40O75150 LINC01003-201ENST00000564834 1764 ntBASIC26.29■■□□□ 1.8
RNF40O75150 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.29■■□□□ 1.8
RNF40O75150 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
RNF40O75150 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.29■■□□□ 1.8
RNF40O75150 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC26.29■■□□□ 1.8
RNF40O75150 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.28■■□□□ 1.8
RNF40O75150 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
RNF40O75150 AC008813.1-201ENST00000536597 885 ntBASIC26.28■■□□□ 1.8
RNF40O75150 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RNF40O75150 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RNF40O75150 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.27■■□□□ 1.8
RNF40O75150 WHAMMP2-203ENST00000563942 1603 ntBASIC26.27■■□□□ 1.8
RNF40O75150 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26.27■■□□□ 1.8
RNF40O75150 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RNF40O75150 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RNF40O75150 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC26.26■■□□□ 1.79
RNF40O75150 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RNF40O75150 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC26.25■■□□□ 1.79
RNF40O75150 AC135983.2-203ENST00000454486 1613 ntBASIC26.25■■□□□ 1.79
RNF40O75150 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.25■■□□□ 1.79
RNF40O75150 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF40O75150 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF40O75150 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF40O75150 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
RNF40O75150 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF40O75150 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF40O75150 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF40O75150 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
RNF40O75150 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RNF40O75150 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RNF40O75150 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
RNF40O75150 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RNF40O75150 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
RNF40O75150 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.22■■□□□ 1.79
RNF40O75150 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.22■■□□□ 1.79
RNF40O75150 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC26.22■■□□□ 1.79
RNF40O75150 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms