Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC28.04■■■□□ 2.08
MSH4O15457 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.04■■■□□ 2.08
MSH4O15457 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
MSH4O15457 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
MSH4O15457 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
MSH4O15457 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
MSH4O15457 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
MSH4O15457 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
MSH4O15457 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
MSH4O15457 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
MSH4O15457 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
MSH4O15457 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC28.01■■■□□ 2.07
MSH4O15457 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
MSH4O15457 AL449106.1-201ENST00000608517 1980 ntBASIC28■■■□□ 2.07
MSH4O15457 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28■■■□□ 2.07
MSH4O15457 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
MSH4O15457 SHF-208ENST00000560734 1731 ntTSL 3 BASIC28■■■□□ 2.07
MSH4O15457 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC28■■■□□ 2.07
MSH4O15457 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC27.99■■■□□ 2.07
MSH4O15457 ECEL1P2-201ENST00000461596 1295 ntBASIC27.99■■■□□ 2.07
MSH4O15457 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC27.99■■■□□ 2.07
MSH4O15457 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC27.98■■■□□ 2.07
MSH4O15457 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
MSH4O15457 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
MSH4O15457 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
MSH4O15457 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
MSH4O15457 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC27.98■■■□□ 2.07
MSH4O15457 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC27.97■■■□□ 2.07
MSH4O15457 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC27.97■■■□□ 2.07
MSH4O15457 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
MSH4O15457 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
MSH4O15457 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
MSH4O15457 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
MSH4O15457 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC27.95■■■□□ 2.07
MSH4O15457 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC27.95■■■□□ 2.07
MSH4O15457 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
MSH4O15457 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC27.95■■■□□ 2.06
MSH4O15457 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC27.95■■■□□ 2.06
MSH4O15457 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
MSH4O15457 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC27.94■■■□□ 2.06
MSH4O15457 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
MSH4O15457 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC27.94■■■□□ 2.06
MSH4O15457 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC27.92■■■□□ 2.06
MSH4O15457 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
MSH4O15457 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
MSH4O15457 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC27.92■■■□□ 2.06
MSH4O15457 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
MSH4O15457 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC27.91■■■□□ 2.06
MSH4O15457 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC27.91■■■□□ 2.06
MSH4O15457 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
MSH4O15457 AL359504.2-201ENST00000605506 1601 ntBASIC27.9■■■□□ 2.06
MSH4O15457 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC27.9■■■□□ 2.06
MSH4O15457 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC27.9■■■□□ 2.06
MSH4O15457 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
MSH4O15457 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
MSH4O15457 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
MSH4O15457 AC025884.2-201ENST00000553429 711 ntBASIC27.89■■■□□ 2.06
MSH4O15457 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC27.89■■■□□ 2.06
MSH4O15457 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC27.89■■■□□ 2.05
MSH4O15457 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
MSH4O15457 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.88■■■□□ 2.05
MSH4O15457 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
MSH4O15457 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
MSH4O15457 SMPD5-203ENST00000639008 1464 ntBASIC27.87■■■□□ 2.05
MSH4O15457 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC27.87■■■□□ 2.05
MSH4O15457 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC27.87■■■□□ 2.05
MSH4O15457 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
MSH4O15457 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH4O15457 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC27.85■■■□□ 2.05
MSH4O15457 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC27.85■■■□□ 2.05
MSH4O15457 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH4O15457 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.85■■■□□ 2.05
MSH4O15457 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC27.85■■■□□ 2.05
MSH4O15457 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
MSH4O15457 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
MSH4O15457 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
MSH4O15457 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
MSH4O15457 ABHD17AP5-201ENST00000580133 923 ntBASIC27.83■■■□□ 2.05
MSH4O15457 REST-210ENST00000638187 1334 ntTSL 5 BASIC27.83■■■□□ 2.05
MSH4O15457 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC27.83■■■□□ 2.05
MSH4O15457 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC27.82■■■□□ 2.04
MSH4O15457 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC27.82■■■□□ 2.04
MSH4O15457 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
MSH4O15457 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC27.81■■■□□ 2.04
MSH4O15457 AC007029.1-201ENST00000604183 313 ntBASIC27.81■■■□□ 2.04
MSH4O15457 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
MSH4O15457 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
MSH4O15457 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
MSH4O15457 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH4O15457 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC27.8■■■□□ 2.04
MSH4O15457 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC27.8■■■□□ 2.04
MSH4O15457 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC27.8■■■□□ 2.04
MSH4O15457 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH4O15457 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH4O15457 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH4O15457 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
MSH4O15457 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
MSH4O15457 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC27.79■■■□□ 2.04
MSH4O15457 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
MSH4O15457 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms