Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 AC145676.1-201ENST00000514988 2004 ntBASIC22.68■■□□□ 1.22
CPSF4LA6NMK7 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CPSF4LA6NMK7 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CPSF4LA6NMK7 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CPSF4LA6NMK7 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.67■■□□□ 1.22
CPSF4LA6NMK7 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CPSF4LA6NMK7 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CPSF4LA6NMK7 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CPSF4LA6NMK7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CPSF4LA6NMK7 LINC01971-201ENST00000617888 1048 ntBASIC22.67■■□□□ 1.22
CPSF4LA6NMK7 AC142472.1-201ENST00000612013 1741 ntBASIC22.67■■□□□ 1.22
CPSF4LA6NMK7 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
CPSF4LA6NMK7 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CPSF4LA6NMK7 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CPSF4LA6NMK7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
CPSF4LA6NMK7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
CPSF4LA6NMK7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CPSF4LA6NMK7 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CPSF4LA6NMK7 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CPSF4LA6NMK7 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CPSF4LA6NMK7 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CPSF4LA6NMK7 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
CPSF4LA6NMK7 AC092803.2-201ENST00000564287 1899 ntBASIC22.64■■□□□ 1.21
CPSF4LA6NMK7 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
CPSF4LA6NMK7 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.63■■□□□ 1.21
CPSF4LA6NMK7 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
CPSF4LA6NMK7 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
CPSF4LA6NMK7 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CPSF4LA6NMK7 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CPSF4LA6NMK7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CPSF4LA6NMK7 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CPSF4LA6NMK7 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC22.62■■□□□ 1.21
CPSF4LA6NMK7 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.62■■□□□ 1.21
CPSF4LA6NMK7 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.62■■□□□ 1.21
CPSF4LA6NMK7 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.62■■□□□ 1.21
CPSF4LA6NMK7 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
CPSF4LA6NMK7 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
CPSF4LA6NMK7 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
CPSF4LA6NMK7 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CPSF4LA6NMK7 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CPSF4LA6NMK7 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 DUX4L13-201ENST00000554103 1267 ntBASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 DUX4L15-201ENST00000611059 1267 ntBASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 DUX4L23-201ENST00000615195 1269 ntBASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 DUX4L24-201ENST00000617576 1269 ntBASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 DUX4L22-201ENST00000618238 1269 ntBASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 DUX4L20-201ENST00000619712 1269 ntBASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 DUX4L21-201ENST00000622058 1269 ntBASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 DUX4L10-201ENST00000622460 1267 ntBASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 DUX4L25-201ENST00000624915 1269 ntBASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.6■■□□□ 1.21
CPSF4LA6NMK7 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CPSF4LA6NMK7 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.59■■□□□ 1.21
CPSF4LA6NMK7 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CPSF4LA6NMK7 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
CPSF4LA6NMK7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CPSF4LA6NMK7 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CPSF4LA6NMK7 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.58■■□□□ 1.21
CPSF4LA6NMK7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.58■■□□□ 1.21
CPSF4LA6NMK7 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CPSF4LA6NMK7 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
CPSF4LA6NMK7 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CPSF4LA6NMK7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CPSF4LA6NMK7 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.57■■□□□ 1.2
CPSF4LA6NMK7 DUSP8P4-201ENST00000399538 1761 ntBASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 DUX4L11-201ENST00000611504 1267 ntBASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 DUX4L12-201ENST00000614593 1267 ntBASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 DUX4L14-201ENST00000621227 1267 ntBASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CPSF4LA6NMK7 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CPSF4LA6NMK7 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.55■■□□□ 1.2
CPSF4LA6NMK7 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CPSF4LA6NMK7 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CPSF4LA6NMK7 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC22.55■■□□□ 1.2
CPSF4LA6NMK7 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CPSF4LA6NMK7 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CPSF4LA6NMK7 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CPSF4LA6NMK7 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.53■■□□□ 1.2
CPSF4LA6NMK7 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CPSF4LA6NMK7 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms