Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 TSPY12P-201ENST00000421279 868 ntBASIC18.57■□□□□ 0.56
RTL3Q8N8U3 KRT18P65-201ENST00000439811 1286 ntBASIC18.57■□□□□ 0.56
RTL3Q8N8U3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 KRT8P26-201ENST00000534154 1276 ntBASIC18.57■□□□□ 0.56
RTL3Q8N8U3 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 AC091076.1-201ENST00000610741 619 ntBASIC18.57■□□□□ 0.56
RTL3Q8N8U3 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 RNF165-205ENST00000588679 2904 ntBASIC18.57■□□□□ 0.56
RTL3Q8N8U3 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RTL3Q8N8U3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 FLJ13224-201ENST00000313737 1514 ntBASIC18.56■□□□□ 0.56
RTL3Q8N8U3 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 AC009154.2-201ENST00000621177 724 ntBASIC18.56■□□□□ 0.56
RTL3Q8N8U3 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RTL3Q8N8U3 AC138028.4-201ENST00000564984 1845 ntBASIC18.56■□□□□ 0.56
RTL3Q8N8U3 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 AL121672.3-201ENST00000608644 468 ntBASIC18.55■□□□□ 0.56
RTL3Q8N8U3 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.55■□□□□ 0.56
RTL3Q8N8U3 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RTL3Q8N8U3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
RTL3Q8N8U3 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
RTL3Q8N8U3 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RTL3Q8N8U3 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RTL3Q8N8U3 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RTL3Q8N8U3 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RTL3Q8N8U3 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
RTL3Q8N8U3 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RTL3Q8N8U3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms