Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.56■□□□□ 0.08
ABCA4P78363 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
ABCA4P78363 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC15.56■□□□□ 0.08
ABCA4P78363 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
ABCA4P78363 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
ABCA4P78363 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.56■□□□□ 0.08
ABCA4P78363 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.56■□□□□ 0.08
ABCA4P78363 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.56■□□□□ 0.08
ABCA4P78363 AC008735.5-201ENST00000623544 497 ntBASIC15.56■□□□□ 0.08
ABCA4P78363 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
ABCA4P78363 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
ABCA4P78363 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
ABCA4P78363 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.56■□□□□ 0.08
ABCA4P78363 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 AC112777.1-201ENST00000540175 1423 ntBASIC15.56■□□□□ 0.08
ABCA4P78363 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
ABCA4P78363 AC004967.1-201ENST00000453589 447 ntBASIC15.56■□□□□ 0.08
ABCA4P78363 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.56■□□□□ 0.08
ABCA4P78363 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.56■□□□□ 0.08
ABCA4P78363 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
ABCA4P78363 INTS4P1-201ENST00000438455 1935 ntBASIC15.56■□□□□ 0.08
ABCA4P78363 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ABCA4P78363 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.56■□□□□ 0.08
ABCA4P78363 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 ZNF259P1-201ENST00000407656 1365 ntBASIC15.55■□□□□ 0.08
ABCA4P78363 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.55■□□□□ 0.08
ABCA4P78363 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 AC098831.1-202ENST00000438821 336 ntBASIC15.55■□□□□ 0.08
ABCA4P78363 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
ABCA4P78363 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
ABCA4P78363 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
ABCA4P78363 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 HTR5BP-201ENST00000430851 1154 ntBASIC15.55■□□□□ 0.08
ABCA4P78363 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.55■□□□□ 0.08
ABCA4P78363 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.55■□□□□ 0.08
ABCA4P78363 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.55■□□□□ 0.08
ABCA4P78363 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.55■□□□□ 0.08
ABCA4P78363 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.55■□□□□ 0.08
ABCA4P78363 AC021087.4-201ENST00000563761 564 ntBASIC15.55■□□□□ 0.08
ABCA4P78363 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 AL356488.2-201ENST00000602755 427 ntBASIC15.55■□□□□ 0.08
ABCA4P78363 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ABCA4P78363 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
ABCA4P78363 HLA-J-201ENST00000462773 1622 ntBASIC15.54■□□□□ 0.08
ABCA4P78363 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.54■□□□□ 0.08
ABCA4P78363 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
ABCA4P78363 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
ABCA4P78363 UPF3AP3-201ENST00000420996 769 ntBASIC15.54■□□□□ 0.08
ABCA4P78363 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.54■□□□□ 0.08
ABCA4P78363 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.54■□□□□ 0.08
ABCA4P78363 AL049840.3-201ENST00000602669 611 ntBASIC15.54■□□□□ 0.08
ABCA4P78363 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.54■□□□□ 0.08
ABCA4P78363 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC15.54■□□□□ 0.08
ABCA4P78363 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC15.54■□□□□ 0.08
ABCA4P78363 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.54■□□□□ 0.08
ABCA4P78363 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
ABCA4P78363 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms