Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.58■□□□□ 0.72
TNFSF9P41273 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFSF9P41273 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFSF9P41273 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TNFSF9P41273 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TNFSF9P41273 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFSF9P41273 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFSF9P41273 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
TNFSF9P41273 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.57■□□□□ 0.72
TNFSF9P41273 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.57■□□□□ 0.72
TNFSF9P41273 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFSF9P41273 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFSF9P41273 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFSF9P41273 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TNFSF9P41273 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 DUSP5P1-201ENST00000441325 1139 ntBASIC19.57■□□□□ 0.72
TNFSF9P41273 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.57■□□□□ 0.72
TNFSF9P41273 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.57■□□□□ 0.72
TNFSF9P41273 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFSF9P41273 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFSF9P41273 AL353801.3-201ENST00000609898 542 ntBASIC19.57■□□□□ 0.72
TNFSF9P41273 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.57■□□□□ 0.72
TNFSF9P41273 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
TNFSF9P41273 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
TNFSF9P41273 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFSF9P41273 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.57■□□□□ 0.72
TNFSF9P41273 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFSF9P41273 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFSF9P41273 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFSF9P41273 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFSF9P41273 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFSF9P41273 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TNFSF9P41273 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.56■□□□□ 0.72
TNFSF9P41273 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.56■□□□□ 0.72
TNFSF9P41273 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.56■□□□□ 0.72
TNFSF9P41273 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.56■□□□□ 0.72
TNFSF9P41273 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.56■□□□□ 0.72
TNFSF9P41273 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.56■□□□□ 0.72
TNFSF9P41273 AC074051.2-201ENST00000565115 352 ntBASIC19.56■□□□□ 0.72
TNFSF9P41273 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFSF9P41273 AC011840.4-201ENST00000578471 627 ntBASIC19.56■□□□□ 0.72
TNFSF9P41273 MIR3652-201ENST00000579335 131 ntBASIC19.56■□□□□ 0.72
TNFSF9P41273 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
TNFSF9P41273 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.56■□□□□ 0.72
TNFSF9P41273 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.56■□□□□ 0.72
TNFSF9P41273 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFSF9P41273 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.56■□□□□ 0.72
TNFSF9P41273 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
TNFSF9P41273 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TNFSF9P41273 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
TNFSF9P41273 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFSF9P41273 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFSF9P41273 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.55■□□□□ 0.72
TNFSF9P41273 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFSF9P41273 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFSF9P41273 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TNFSF9P41273 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFSF9P41273 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFSF9P41273 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFSF9P41273 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.55■□□□□ 0.72
TNFSF9P41273 AC005336.2-201ENST00000593183 939 ntBASIC19.55■□□□□ 0.72
TNFSF9P41273 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.55■□□□□ 0.72
TNFSF9P41273 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.55■□□□□ 0.72
TNFSF9P41273 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFSF9P41273 AP000997.3-201ENST00000623333 2250 ntBASIC19.55■□□□□ 0.72
TNFSF9P41273 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TNFSF9P41273 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms