Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.65■■□□□ 1.06
COL4A5P29400 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A5P29400 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A5P29400 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
COL4A5P29400 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
COL4A5P29400 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A5P29400 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A5P29400 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.65■■□□□ 1.06
COL4A5P29400 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL4A5P29400 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC21.65■■□□□ 1.06
COL4A5P29400 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC21.65■■□□□ 1.06
COL4A5P29400 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC21.65■■□□□ 1.06
COL4A5P29400 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
COL4A5P29400 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.65■■□□□ 1.06
COL4A5P29400 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.65■■□□□ 1.06
COL4A5P29400 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC21.65■■□□□ 1.06
COL4A5P29400 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
COL4A5P29400 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
COL4A5P29400 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.06
COL4A5P29400 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A5P29400 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.64■■□□□ 1.06
COL4A5P29400 ELL2P1-201ENST00000413990 1906 ntBASIC21.64■■□□□ 1.06
COL4A5P29400 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL4A5P29400 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.64■■□□□ 1.06
COL4A5P29400 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A5P29400 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.64■■□□□ 1.05
COL4A5P29400 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A5P29400 CD82-202ENST00000342935 967 ntTSL 5 BASIC21.64■■□□□ 1.05
COL4A5P29400 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC21.64■■□□□ 1.05
COL4A5P29400 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL4A5P29400 PRYP5-201ENST00000451909 266 ntBASIC21.64■■□□□ 1.05
COL4A5P29400 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.64■■□□□ 1.05
COL4A5P29400 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.64■■□□□ 1.05
COL4A5P29400 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.64■■□□□ 1.05
COL4A5P29400 AC004706.3-202ENST00000621574 984 ntBASIC21.64■■□□□ 1.05
COL4A5P29400 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC21.64■■□□□ 1.05
COL4A5P29400 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.64■■□□□ 1.05
COL4A5P29400 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.64■■□□□ 1.05
COL4A5P29400 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL4A5P29400 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL4A5P29400 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
COL4A5P29400 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A5P29400 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
COL4A5P29400 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 PNMT-202ENST00000394246 821 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A5P29400 FAM8A3P-201ENST00000427218 844 ntBASIC21.63■■□□□ 1.05
COL4A5P29400 AC122714.2-201ENST00000502787 707 ntBASIC21.63■■□□□ 1.05
COL4A5P29400 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC21.63■■□□□ 1.05
COL4A5P29400 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A5P29400 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A5P29400 SNHG9-202ENST00000564014 471 ntBASIC21.63■■□□□ 1.05
COL4A5P29400 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A5P29400 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.63■■□□□ 1.05
COL4A5P29400 AC106028.4-201ENST00000614509 607 ntBASIC21.63■■□□□ 1.05
COL4A5P29400 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
COL4A5P29400 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A5P29400 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
COL4A5P29400 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A5P29400 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A5P29400 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
COL4A5P29400 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL4A5P29400 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A5P29400 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.63■■□□□ 1.05
COL4A5P29400 AL645939.2-201ENST00000427340 991 ntBASIC21.63■■□□□ 1.05
COL4A5P29400 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.63■■□□□ 1.05
COL4A5P29400 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC21.63■■□□□ 1.05
COL4A5P29400 SPCS2P1-201ENST00000561636 679 ntBASIC21.63■■□□□ 1.05
COL4A5P29400 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC21.63■■□□□ 1.05
COL4A5P29400 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.62■■□□□ 1.05
COL4A5P29400 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
COL4A5P29400 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL4A5P29400 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL4A5P29400 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.62■■□□□ 1.05
COL4A5P29400 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC21.62■■□□□ 1.05
COL4A5P29400 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL4A5P29400 AL031432.2-201ENST00000566714 459 ntBASIC21.62■■□□□ 1.05
COL4A5P29400 AL928711.1-201ENST00000570165 459 ntBASIC21.62■■□□□ 1.05
COL4A5P29400 MIR4751-201ENST00000578027 74 ntBASIC21.62■■□□□ 1.05
COL4A5P29400 CYB561-217ENST00000582997 877 ntTSL 5 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms