Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.79■□□□□ 0.44
SHMT2P34897 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.79■□□□□ 0.44
SHMT2P34897 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.79■□□□□ 0.44
SHMT2P34897 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.79■□□□□ 0.44
SHMT2P34897 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.79■□□□□ 0.44
SHMT2P34897 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SHMT2P34897 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.79■□□□□ 0.44
SHMT2P34897 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.79■□□□□ 0.44
SHMT2P34897 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.79■□□□□ 0.44
SHMT2P34897 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SHMT2P34897 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SHMT2P34897 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SHMT2P34897 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.78■□□□□ 0.44
SHMT2P34897 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 FAM86EP-206ENST00000510506 987 ntBASIC17.78■□□□□ 0.44
SHMT2P34897 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.78■□□□□ 0.44
SHMT2P34897 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.78■□□□□ 0.44
SHMT2P34897 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.78■□□□□ 0.44
SHMT2P34897 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.78■□□□□ 0.44
SHMT2P34897 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SHMT2P34897 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.78■□□□□ 0.44
SHMT2P34897 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.78■□□□□ 0.44
SHMT2P34897 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.78■□□□□ 0.44
SHMT2P34897 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SHMT2P34897 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SHMT2P34897 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SHMT2P34897 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHMT2P34897 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SHMT2P34897 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
SHMT2P34897 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHMT2P34897 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.77■□□□□ 0.44
SHMT2P34897 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHMT2P34897 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.77■□□□□ 0.44
SHMT2P34897 AL645929.1-201ENST00000420084 975 ntBASIC17.77■□□□□ 0.44
SHMT2P34897 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SHMT2P34897 SPDYE13P-201ENST00000445314 798 ntBASIC17.77■□□□□ 0.44
SHMT2P34897 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.77■□□□□ 0.44
SHMT2P34897 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.77■□□□□ 0.44
SHMT2P34897 AC008687.5-201ENST00000593746 558 ntBASIC17.77■□□□□ 0.44
SHMT2P34897 AC091076.1-201ENST00000610741 619 ntBASIC17.77■□□□□ 0.44
SHMT2P34897 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SHMT2P34897 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.77■□□□□ 0.44
SHMT2P34897 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.77■□□□□ 0.44
SHMT2P34897 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SHMT2P34897 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SHMT2P34897 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.77■□□□□ 0.43
SHMT2P34897 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.77■□□□□ 0.43
SHMT2P34897 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
SHMT2P34897 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SHMT2P34897 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 BCL2-203ENST00000589955 5011 ntBASIC17.76■□□□□ 0.43
SHMT2P34897 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.76■□□□□ 0.43
SHMT2P34897 AC005332.1-201ENST00000577698 1310 ntBASIC17.76■□□□□ 0.43
SHMT2P34897 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SHMT2P34897 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 PCED1CP-201ENST00000419887 785 ntBASIC17.76■□□□□ 0.43
SHMT2P34897 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SHMT2P34897 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.76■□□□□ 0.43
SHMT2P34897 AL358472.4-201ENST00000633140 710 ntBASIC17.76■□□□□ 0.43
SHMT2P34897 AP000550.4-202ENST00000639755 178 ntBASIC17.76■□□□□ 0.43
SHMT2P34897 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SHMT2P34897 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SHMT2P34897 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.76■□□□□ 0.43
SHMT2P34897 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.76■□□□□ 0.43
SHMT2P34897 SDHAP2-201ENST00000455183 2001 ntBASIC17.76■□□□□ 0.43
SHMT2P34897 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SHMT2P34897 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.75■□□□□ 0.43
SHMT2P34897 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.75■□□□□ 0.43
SHMT2P34897 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SHMT2P34897 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
SHMT2P34897 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
SHMT2P34897 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SHMT2P34897 MIR662-201ENST00000384847 95 ntBASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms