Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
TPM1P09493 AC034236.2-201ENST00000606662 1610 ntBASIC20.03■□□□□ 0.8
TPM1P09493 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 AC106820.2-201ENST00000563775 3264 ntBASIC20.03■□□□□ 0.8
TPM1P09493 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.03■□□□□ 0.8
TPM1P09493 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.03■□□□□ 0.8
TPM1P09493 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TPM1P09493 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.03■□□□□ 0.8
TPM1P09493 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TPM1P09493 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
TPM1P09493 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TPM1P09493 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.02■□□□□ 0.8
TPM1P09493 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TPM1P09493 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TPM1P09493 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TPM1P09493 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.02■□□□□ 0.8
TPM1P09493 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TPM1P09493 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TPM1P09493 MCCD1P1-208ENST00000445732 328 ntBASIC20.02■□□□□ 0.8
TPM1P09493 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
TPM1P09493 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.02■□□□□ 0.8
TPM1P09493 CR392000.1-201ENST00000624770 1228 ntBASIC20.02■□□□□ 0.8
TPM1P09493 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TPM1P09493 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TPM1P09493 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TPM1P09493 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TPM1P09493 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TPM1P09493 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TPM1P09493 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.02■□□□□ 0.79
TPM1P09493 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TPM1P09493 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
TPM1P09493 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.02■□□□□ 0.79
TPM1P09493 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
TPM1P09493 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.01■□□□□ 0.79
TPM1P09493 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
TPM1P09493 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.01■□□□□ 0.79
TPM1P09493 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.01■□□□□ 0.79
TPM1P09493 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.01■□□□□ 0.79
TPM1P09493 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.01■□□□□ 0.79
TPM1P09493 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC20.01■□□□□ 0.79
TPM1P09493 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.01■□□□□ 0.79
TPM1P09493 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.01■□□□□ 0.79
TPM1P09493 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.01■□□□□ 0.79
TPM1P09493 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
TPM1P09493 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
TPM1P09493 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
TPM1P09493 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TPM1P09493 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TPM1P09493 PHGDH-209ENST00000641074 1780 ntBASIC20■□□□□ 0.79
TPM1P09493 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TPM1P09493 TNRC18P3-201ENST00000441896 2691 ntBASIC20■□□□□ 0.79
TPM1P09493 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
TPM1P09493 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20■□□□□ 0.79
TPM1P09493 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20■□□□□ 0.79
TPM1P09493 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
TPM1P09493 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TPM1P09493 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC20■□□□□ 0.79
TPM1P09493 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TPM1P09493 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20■□□□□ 0.79
TPM1P09493 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20■□□□□ 0.79
TPM1P09493 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
TPM1P09493 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20■□□□□ 0.79
TPM1P09493 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20■□□□□ 0.79
TPM1P09493 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
TPM1P09493 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms