Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS4BO75351 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
VPS4BO75351 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.84■□□□□ 0.45
VPS4BO75351 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS4BO75351 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
VPS4BO75351 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS4BO75351 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS4BO75351 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.83■□□□□ 0.45
VPS4BO75351 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VPS4BO75351 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS4BO75351 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.83■□□□□ 0.45
VPS4BO75351 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS4BO75351 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS4BO75351 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS4BO75351 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS4BO75351 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.83■□□□□ 0.45
VPS4BO75351 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
VPS4BO75351 FAM8A6P-201ENST00000407496 1135 ntBASIC17.83■□□□□ 0.44
VPS4BO75351 HMGA1P5-201ENST00000412453 271 ntBASIC17.83■□□□□ 0.44
VPS4BO75351 AC009947.2-201ENST00000444014 672 ntBASIC17.83■□□□□ 0.44
VPS4BO75351 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.83■□□□□ 0.44
VPS4BO75351 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.83■□□□□ 0.44
VPS4BO75351 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.83■□□□□ 0.44
VPS4BO75351 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.83■□□□□ 0.44
VPS4BO75351 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.83■□□□□ 0.44
VPS4BO75351 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
VPS4BO75351 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
VPS4BO75351 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS4BO75351 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS4BO75351 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VPS4BO75351 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.82■□□□□ 0.44
VPS4BO75351 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.82■□□□□ 0.44
VPS4BO75351 AL031133.1-201ENST00000406807 723 ntBASIC17.82■□□□□ 0.44
VPS4BO75351 AC026396.1-201ENST00000419388 421 ntBASIC17.82■□□□□ 0.44
VPS4BO75351 AC117947.1-201ENST00000427448 529 ntBASIC17.82■□□□□ 0.44
VPS4BO75351 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 LINC00896-202ENST00000609602 2128 ntBASIC17.82■□□□□ 0.44
VPS4BO75351 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VPS4BO75351 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS4BO75351 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VPS4BO75351 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS4BO75351 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.82■□□□□ 0.44
VPS4BO75351 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS4BO75351 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS4BO75351 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
VPS4BO75351 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS4BO75351 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VPS4BO75351 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS4BO75351 AC034236.2-201ENST00000606662 1610 ntBASIC17.81■□□□□ 0.44
VPS4BO75351 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS4BO75351 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS4BO75351 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS4BO75351 AC008040.2-201ENST00000461049 708 ntBASIC17.81■□□□□ 0.44
VPS4BO75351 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.81■□□□□ 0.44
VPS4BO75351 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.81■□□□□ 0.44
VPS4BO75351 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.81■□□□□ 0.44
VPS4BO75351 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VPS4BO75351 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VPS4BO75351 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
VPS4BO75351 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
VPS4BO75351 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS4BO75351 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VPS4BO75351 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms