Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.96■□□□□ 0.31
CACNA1AO00555 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.96■□□□□ 0.31
CACNA1AO00555 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC16.96■□□□□ 0.31
CACNA1AO00555 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CACNA1AO00555 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.96■□□□□ 0.31
CACNA1AO00555 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CACNA1AO00555 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CACNA1AO00555 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
CACNA1AO00555 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CACNA1AO00555 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CACNA1AO00555 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.96■□□□□ 0.3
CACNA1AO00555 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CACNA1AO00555 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CACNA1AO00555 AC009118.2-201ENST00000613275 655 ntBASIC16.96■□□□□ 0.3
CACNA1AO00555 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.3
CACNA1AO00555 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.95■□□□□ 0.3
CACNA1AO00555 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.95■□□□□ 0.3
CACNA1AO00555 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
CACNA1AO00555 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CACNA1AO00555 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.95■□□□□ 0.3
CACNA1AO00555 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.95■□□□□ 0.3
CACNA1AO00555 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CACNA1AO00555 GPS2P2-201ENST00000430745 888 ntBASIC16.95■□□□□ 0.3
CACNA1AO00555 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.95■□□□□ 0.3
CACNA1AO00555 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.95■□□□□ 0.3
CACNA1AO00555 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.95■□□□□ 0.3
CACNA1AO00555 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.95■□□□□ 0.3
CACNA1AO00555 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.95■□□□□ 0.3
CACNA1AO00555 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
CACNA1AO00555 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.95■□□□□ 0.3
CACNA1AO00555 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
CACNA1AO00555 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.95■□□□□ 0.3
CACNA1AO00555 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.95■□□□□ 0.3
CACNA1AO00555 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.95■□□□□ 0.3
CACNA1AO00555 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.95■□□□□ 0.3
CACNA1AO00555 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.95■□□□□ 0.3
CACNA1AO00555 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.95■□□□□ 0.3
CACNA1AO00555 AC023141.13-201ENST00000604991 943 ntBASIC16.95■□□□□ 0.3
CACNA1AO00555 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.95■□□□□ 0.3
CACNA1AO00555 AC004706.3-202ENST00000621574 984 ntBASIC16.95■□□□□ 0.3
CACNA1AO00555 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CACNA1AO00555 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CACNA1AO00555 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CACNA1AO00555 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CACNA1AO00555 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CACNA1AO00555 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CACNA1AO00555 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.94■□□□□ 0.3
CACNA1AO00555 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC16.94■□□□□ 0.3
CACNA1AO00555 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CACNA1AO00555 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.94■□□□□ 0.3
CACNA1AO00555 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.94■□□□□ 0.3
CACNA1AO00555 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CACNA1AO00555 CASK-201ENST00000378154 2494 ntTSL 5 BASIC16.94■□□□□ 0.3
CACNA1AO00555 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CACNA1AO00555 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CACNA1AO00555 AL163051.1-201ENST00000569214 1512 ntBASIC16.94■□□□□ 0.3
CACNA1AO00555 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CACNA1AO00555 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CACNA1AO00555 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.94■□□□□ 0.3
CACNA1AO00555 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.94■□□□□ 0.3
CACNA1AO00555 GIMAP3P-201ENST00000495150 836 ntBASIC16.94■□□□□ 0.3
CACNA1AO00555 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.94■□□□□ 0.3
CACNA1AO00555 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CACNA1AO00555 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.94■□□□□ 0.3
CACNA1AO00555 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.94■□□□□ 0.3
CACNA1AO00555 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.94■□□□□ 0.3
CACNA1AO00555 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.93■□□□□ 0.3
CACNA1AO00555 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CACNA1AO00555 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
CACNA1AO00555 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.93■□□□□ 0.3
CACNA1AO00555 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.93■□□□□ 0.3
CACNA1AO00555 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CACNA1AO00555 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.93■□□□□ 0.3
CACNA1AO00555 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.93■□□□□ 0.3
CACNA1AO00555 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.93■□□□□ 0.3
CACNA1AO00555 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CACNA1AO00555 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.93■□□□□ 0.3
CACNA1AO00555 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC16.93■□□□□ 0.3
CACNA1AO00555 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CACNA1AO00555 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms