Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 AL645608.8-201ENST00000606034 2086 ntBASIC17.5■□□□□ 0.39
VPS33AQ96AX1 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS33AQ96AX1 PP12613-201ENST00000424958 2230 ntBASIC17.49■□□□□ 0.39
VPS33AQ96AX1 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 RPPH1-201ENST00000516869 333 ntBASIC17.49■□□□□ 0.39
VPS33AQ96AX1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 RARRES2P10-201ENST00000564312 460 ntBASIC17.49■□□□□ 0.39
VPS33AQ96AX1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 FSCN1P1-201ENST00000568912 1481 ntBASIC17.49■□□□□ 0.39
VPS33AQ96AX1 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
VPS33AQ96AX1 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 SDHAP2-201ENST00000455183 2001 ntBASIC17.48■□□□□ 0.39
VPS33AQ96AX1 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS33AQ96AX1 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 AC080080.1-201ENST00000625121 2420 ntBASIC17.47■□□□□ 0.39
VPS33AQ96AX1 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 FAM197Y1-201ENST00000421178 764 ntBASIC17.47■□□□□ 0.39
VPS33AQ96AX1 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS33AQ96AX1 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms