Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGB1P09429 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.5■■□□□ 1.03
HMGB1P09429 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 KRT89P-201ENST00000620027 1478 ntBASIC21.5■■□□□ 1.03
HMGB1P09429 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGB1P09429 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
HMGB1P09429 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB1P09429 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
HMGB1P09429 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
HMGB1P09429 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
HMGB1P09429 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 AC117947.1-201ENST00000427448 529 ntBASIC21.49■■□□□ 1.03
HMGB1P09429 DUTP2-201ENST00000519164 463 ntBASIC21.49■■□□□ 1.03
HMGB1P09429 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.49■■□□□ 1.03
HMGB1P09429 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
HMGB1P09429 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB1P09429 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC21.49■■□□□ 1.03
HMGB1P09429 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.49■■□□□ 1.03
HMGB1P09429 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
HMGB1P09429 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB1P09429 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB1P09429 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB1P09429 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
HMGB1P09429 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
HMGB1P09429 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
HMGB1P09429 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.48■■□□□ 1.03
HMGB1P09429 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.48■■□□□ 1.03
HMGB1P09429 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
HMGB1P09429 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
HMGB1P09429 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGB1P09429 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
HMGB1P09429 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
HMGB1P09429 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
HMGB1P09429 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
HMGB1P09429 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.48■■□□□ 1.03
HMGB1P09429 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGB1P09429 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB1P09429 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.47■■□□□ 1.03
HMGB1P09429 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
HMGB1P09429 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 AP000997.3-201ENST00000623333 2250 ntBASIC21.47■■□□□ 1.03
HMGB1P09429 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGB1P09429 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
HMGB1P09429 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 RNF152P1-201ENST00000397754 604 ntBASIC21.47■■□□□ 1.03
HMGB1P09429 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.47■■□□□ 1.03
HMGB1P09429 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.47■■□□□ 1.03
HMGB1P09429 HOMER2P1-201ENST00000455653 964 ntBASIC21.47■■□□□ 1.03
HMGB1P09429 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGB1P09429 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.47■■□□□ 1.03
HMGB1P09429 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGB1P09429 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.47■■□□□ 1.03
HMGB1P09429 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.47■■□□□ 1.03
HMGB1P09429 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
HMGB1P09429 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
HMGB1P09429 AL391807.1-203ENST00000604392 2365 ntBASIC21.47■■□□□ 1.03
HMGB1P09429 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
HMGB1P09429 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB1P09429 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms