Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 SIRPAP1-201ENST00000448467 1770 ntBASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 AP002982.1-201ENST00000492365 877 ntBASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 AL445675.2-201ENST00000620291 557 ntBASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 GNAS-203ENST00000306120 1878 ntBASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 AL499627.1-201ENST00000569373 2188 ntBASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 MTMR9LP-203ENST00000426597 1545 ntBASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CHMP1AQ9HD42 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 DERL1-203ENST00000419562 918 ntTSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 POU5F1P3-201ENST00000428824 1078 ntBASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 AC068587.9-201ENST00000641814 219 ntBASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CHMP1AQ9HD42 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CHMP1AQ9HD42 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms