Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VRK1Q99986 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK1Q99986 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK1Q99986 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK1Q99986 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK1Q99986 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 KRT8P45-201ENST00000414328 1447 ntBASIC16.15■□□□□ 0.18
VRK1Q99986 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 TSPY23P-201ENST00000440136 739 ntBASIC16.15■□□□□ 0.18
VRK1Q99986 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VRK1Q99986 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.15■□□□□ 0.18
VRK1Q99986 AC063952.2-201ENST00000498792 1227 ntBASIC16.15■□□□□ 0.18
VRK1Q99986 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.15■□□□□ 0.18
VRK1Q99986 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VRK1Q99986 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VRK1Q99986 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.18
VRK1Q99986 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.14■□□□□ 0.18
VRK1Q99986 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
VRK1Q99986 AL161938.1-201ENST00000569833 2180 ntBASIC16.14■□□□□ 0.17
VRK1Q99986 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK1Q99986 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK1Q99986 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.14■□□□□ 0.17
VRK1Q99986 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK1Q99986 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
VRK1Q99986 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.14■□□□□ 0.17
VRK1Q99986 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.14■□□□□ 0.17
VRK1Q99986 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.14■□□□□ 0.17
VRK1Q99986 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 AC011558.1-201ENST00000623459 338 ntBASIC16.14■□□□□ 0.17
VRK1Q99986 AL023973.1-201ENST00000624619 620 ntBASIC16.14■□□□□ 0.17
VRK1Q99986 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VRK1Q99986 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.14■□□□□ 0.17
VRK1Q99986 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VRK1Q99986 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.14■□□□□ 0.17
VRK1Q99986 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.14■□□□□ 0.17
VRK1Q99986 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VRK1Q99986 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VRK1Q99986 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
VRK1Q99986 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VRK1Q99986 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK1Q99986 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK1Q99986 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK1Q99986 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK1Q99986 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.13■□□□□ 0.17
VRK1Q99986 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.13■□□□□ 0.17
VRK1Q99986 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.13■□□□□ 0.17
VRK1Q99986 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.13■□□□□ 0.17
VRK1Q99986 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VRK1Q99986 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms