Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC14.93□□□□□ -0.02
CDX1P47902 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CDX1P47902 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CDX1P47902 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CDX1P47902 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC14.93□□□□□ -0.02
CDX1P47902 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC14.93□□□□□ -0.02
CDX1P47902 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC14.93□□□□□ -0.02
CDX1P47902 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC14.93□□□□□ -0.02
CDX1P47902 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC14.93□□□□□ -0.02
CDX1P47902 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC14.93□□□□□ -0.02
CDX1P47902 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
CDX1P47902 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 LINC01568-207ENST00000641790 1380 ntBASIC14.93□□□□□ -0.02
CDX1P47902 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 ESPNP-201ENST00000270691 2015 ntBASIC14.93□□□□□ -0.02
CDX1P47902 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC14.93□□□□□ -0.02
CDX1P47902 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
CDX1P47902 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDX1P47902 KRT8P9-201ENST00000558927 1449 ntBASIC14.92□□□□□ -0.02
CDX1P47902 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC14.92□□□□□ -0.02
CDX1P47902 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CDX1P47902 OR6D1P-202ENST00000641007 5290 ntBASIC14.92□□□□□ -0.02
CDX1P47902 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.92□□□□□ -0.02
CDX1P47902 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
CDX1P47902 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CDX1P47902 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC14.92□□□□□ -0.02
CDX1P47902 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CDX1P47902 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.92□□□□□ -0.02
CDX1P47902 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 CRAT-202ENST00000393384 973 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 AC008040.2-201ENST00000461049 708 ntBASIC14.92□□□□□ -0.02
CDX1P47902 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC14.92□□□□□ -0.02
CDX1P47902 EGLN1P1-201ENST00000531623 762 ntBASIC14.92□□□□□ -0.02
CDX1P47902 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
CDX1P47902 AC010947.1-201ENST00000623454 693 ntBASIC14.92□□□□□ -0.02
CDX1P47902 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
CDX1P47902 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC14.92□□□□□ -0.02
CDX1P47902 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC14.92□□□□□ -0.02
CDX1P47902 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CDX1P47902 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.92□□□□□ -0.02
CDX1P47902 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC14.92□□□□□ -0.02
CDX1P47902 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDX1P47902 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDX1P47902 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDX1P47902 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDX1P47902 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDX1P47902 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC14.91□□□□□ -0.02
CDX1P47902 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.91□□□□□ -0.02
CDX1P47902 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC14.91□□□□□ -0.02
CDX1P47902 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
CDX1P47902 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC14.91□□□□□ -0.02
CDX1P47902 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC14.91□□□□□ -0.02
CDX1P47902 CYP2D8P-201ENST00000433633 1490 ntBASIC14.91□□□□□ -0.02
CDX1P47902 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDX1P47902 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CDX1P47902 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC14.91□□□□□ -0.02
CDX1P47902 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CDX1P47902 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC14.91□□□□□ -0.02
CDX1P47902 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CDX1P47902 AC128688.1-201ENST00000487626 519 ntBASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms