Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM38O00635 HCG11-201ENST00000411553 5696 ntBASIC18.41■□□□□ 0.54
TRIM38O00635 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM38O00635 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM38O00635 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM38O00635 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 AL645929.1-201ENST00000420084 975 ntBASIC18.41■□□□□ 0.54
TRIM38O00635 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.41■□□□□ 0.54
TRIM38O00635 AC092119.3-201ENST00000612618 583 ntBASIC18.41■□□□□ 0.54
TRIM38O00635 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM38O00635 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM38O00635 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM38O00635 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM38O00635 AP000997.3-201ENST00000623333 2250 ntBASIC18.4■□□□□ 0.54
TRIM38O00635 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM38O00635 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM38O00635 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM38O00635 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM38O00635 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM38O00635 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM38O00635 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM38O00635 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM38O00635 AC036111.1-201ENST00000533973 1582 ntBASIC18.4■□□□□ 0.54
TRIM38O00635 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRIM38O00635 AL023284.2-201ENST00000405850 579 ntBASIC18.4■□□□□ 0.54
TRIM38O00635 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM38O00635 AC034232.1-201ENST00000506026 1064 ntBASIC18.4■□□□□ 0.54
TRIM38O00635 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM38O00635 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.4■□□□□ 0.54
TRIM38O00635 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM38O00635 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM38O00635 AC068880.1-201ENST00000507289 2297 ntBASIC18.4■□□□□ 0.54
TRIM38O00635 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM38O00635 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.4■□□□□ 0.54
TRIM38O00635 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM38O00635 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM38O00635 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRIM38O00635 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRIM38O00635 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM38O00635 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM38O00635 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
TRIM38O00635 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.39■□□□□ 0.54
TRIM38O00635 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM38O00635 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
TRIM38O00635 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TRIM38O00635 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM38O00635 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM38O00635 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.39■□□□□ 0.53
TRIM38O00635 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM38O00635 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM38O00635 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM38O00635 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM38O00635 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM38O00635 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.38■□□□□ 0.53
TRIM38O00635 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM38O00635 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.38■□□□□ 0.53
TRIM38O00635 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.38■□□□□ 0.53
TRIM38O00635 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
TRIM38O00635 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM38O00635 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM38O00635 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM38O00635 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM38O00635 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM38O00635 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
TRIM38O00635 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TRIM38O00635 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM38O00635 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM38O00635 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms