Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 AL163051.1-201ENST00000569214 1512 ntBASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 MIR3180-4-201ENST00000582223 153 ntBASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A3BPQ9Y5P4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A3BPQ9Y5P4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 AL390961.4-201ENST00000623958 2535 ntBASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 AC009065.1-201ENST00000564055 1225 ntBASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 AL136038.4-201ENST00000603606 1261 ntBASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A3BPQ9Y5P4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.45■□□□□ 0.87
COL4A3BPQ9Y5P4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
COL4A3BPQ9Y5P4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A3BPQ9Y5P4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A3BPQ9Y5P4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A3BPQ9Y5P4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.45■□□□□ 0.86
COL4A3BPQ9Y5P4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A3BPQ9Y5P4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms