Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PCDHB3Q9Y5E6 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.96■□□□□ 0.46
PCDHB3Q9Y5E6 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PCDHB3Q9Y5E6 AC073592.3-201ENST00000625118 1834 ntBASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 FAM86EP-206ENST00000510506 987 ntBASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 CR769767.2-201ENST00000622735 460 ntBASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHB3Q9Y5E6 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 AC093458.2-201ENST00000623150 629 ntBASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 KRT8P3-201ENST00000519669 1449 ntBASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHB3Q9Y5E6 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 AP000997.3-201ENST00000623333 2250 ntBASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
PCDHB3Q9Y5E6 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 AL162741.1-201ENST00000565563 1558 ntBASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 AC020916.1-201ENST00000587762 1774 ntBASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms