Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28AQ8IWP9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 MIR6084-201ENST00000622012 110 ntBASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 AC007950.2-201ENST00000615045 2347 ntBASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28AQ8IWP9 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 AC079140.4-201ENST00000507448 529 ntBASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28AQ8IWP9 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms