Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RNF4P78317 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
RNF4P78317 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
RNF4P78317 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.93■□□□□ 0.3
RNF4P78317 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RNF4P78317 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
RNF4P78317 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.92■□□□□ 0.3
RNF4P78317 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
RNF4P78317 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.92■□□□□ 0.3
RNF4P78317 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.92■□□□□ 0.3
RNF4P78317 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 UPK3BP1-201ENST00000428678 509 ntBASIC16.92■□□□□ 0.3
RNF4P78317 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
RNF4P78317 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.92■□□□□ 0.3
RNF4P78317 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.92■□□□□ 0.3
RNF4P78317 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.92■□□□□ 0.3
RNF4P78317 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.92■□□□□ 0.3
RNF4P78317 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.92■□□□□ 0.3
RNF4P78317 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.92■□□□□ 0.3
RNF4P78317 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.92■□□□□ 0.3
RNF4P78317 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
RNF4P78317 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
RNF4P78317 AC026471.1-201ENST00000564629 3026 ntBASIC16.92■□□□□ 0.3
RNF4P78317 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.92■□□□□ 0.3
RNF4P78317 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.92■□□□□ 0.3
RNF4P78317 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.92■□□□□ 0.3
RNF4P78317 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.92■□□□□ 0.3
RNF4P78317 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF4P78317 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.91■□□□□ 0.3
RNF4P78317 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.91■□□□□ 0.3
RNF4P78317 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 GMCL1P1-201ENST00000463439 1581 ntBASIC16.91■□□□□ 0.3
RNF4P78317 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.91■□□□□ 0.3
RNF4P78317 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.91■□□□□ 0.3
RNF4P78317 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 AC005332.3-201ENST00000589904 676 ntBASIC16.91■□□□□ 0.3
RNF4P78317 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
RNF4P78317 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF4P78317 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF4P78317 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
RNF4P78317 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
RNF4P78317 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.9■□□□□ 0.3
RNF4P78317 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.9■□□□□ 0.3
RNF4P78317 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF4P78317 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms