Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 CYP2T1P-201ENST00000432607 1285 ntBASIC14.76□□□□□ -0.05
HMGB3O15347 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 DBI-210ENST00000542275 757 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB3O15347 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC14.76□□□□□ -0.05
HMGB3O15347 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
HMGB3O15347 AC005837.3-201ENST00000612163 286 ntBASIC14.76□□□□□ -0.05
HMGB3O15347 AC008694.1-202ENST00000636953 945 ntBASIC14.76□□□□□ -0.05
HMGB3O15347 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HMGB3O15347 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
HMGB3O15347 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB3O15347 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 TNRC18P3-201ENST00000441896 2691 ntBASIC14.76□□□□□ -0.05
HMGB3O15347 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.76□□□□□ -0.05
HMGB3O15347 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC14.76□□□□□ -0.05
HMGB3O15347 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.76□□□□□ -0.05
HMGB3O15347 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HMGB3O15347 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HMGB3O15347 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB3O15347 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HMGB3O15347 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB3O15347 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
HMGB3O15347 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
HMGB3O15347 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB3O15347 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HMGB3O15347 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC14.75□□□□□ -0.05
HMGB3O15347 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
HMGB3O15347 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
HMGB3O15347 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
HMGB3O15347 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
HMGB3O15347 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HMGB3O15347 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HMGB3O15347 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.75□□□□□ -0.05
HMGB3O15347 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HMGB3O15347 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.74□□□□□ -0.05
HMGB3O15347 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGB3O15347 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HMGB3O15347 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGB3O15347 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB3O15347 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HMGB3O15347 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HMGB3O15347 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
HMGB3O15347 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGB3O15347 STX7-201ENST00000367937 1090 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGB3O15347 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGB3O15347 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGB3O15347 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGB3O15347 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HMGB3O15347 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC14.74□□□□□ -0.05
HMGB3O15347 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGB3O15347 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC14.74□□□□□ -0.05
HMGB3O15347 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC14.74□□□□□ -0.05
HMGB3O15347 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms