Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.45■□□□□ 0.54
TRIM38O00635 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM38O00635 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM38O00635 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM38O00635 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM38O00635 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.45■□□□□ 0.54
TRIM38O00635 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
TRIM38O00635 AC090340.1-201ENST00000620778 4980 ntBASIC18.44■□□□□ 0.54
TRIM38O00635 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM38O00635 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.44■□□□□ 0.54
TRIM38O00635 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TRIM38O00635 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TRIM38O00635 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM38O00635 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TRIM38O00635 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 AC026396.1-201ENST00000419388 421 ntBASIC18.44■□□□□ 0.54
TRIM38O00635 RASA4DP-201ENST00000460726 1199 ntBASIC18.44■□□□□ 0.54
TRIM38O00635 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.54
TRIM38O00635 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.44■□□□□ 0.54
TRIM38O00635 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.44■□□□□ 0.54
TRIM38O00635 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
TRIM38O00635 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.44■□□□□ 0.54
TRIM38O00635 AC020916.1-201ENST00000587762 1774 ntBASIC18.44■□□□□ 0.54
TRIM38O00635 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM38O00635 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
TRIM38O00635 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM38O00635 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.44■□□□□ 0.54
TRIM38O00635 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
TRIM38O00635 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
TRIM38O00635 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TRIM38O00635 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
TRIM38O00635 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.43■□□□□ 0.54
TRIM38O00635 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 TSPY21P-201ENST00000433481 731 ntBASIC18.43■□□□□ 0.54
TRIM38O00635 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM38O00635 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.43■□□□□ 0.54
TRIM38O00635 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM38O00635 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 AL512353.2-201ENST00000448759 1962 ntBASIC18.42■□□□□ 0.54
TRIM38O00635 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRIM38O00635 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM38O00635 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRIM38O00635 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM38O00635 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRIM38O00635 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM38O00635 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.42■□□□□ 0.54
TRIM38O00635 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.42■□□□□ 0.54
TRIM38O00635 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
TRIM38O00635 AC024243.1-201ENST00000609234 778 ntBASIC18.42■□□□□ 0.54
TRIM38O00635 NPAP1P7-201ENST00000613027 823 ntBASIC18.42■□□□□ 0.54
TRIM38O00635 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM38O00635 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRIM38O00635 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM38O00635 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM38O00635 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
TRIM38O00635 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
TRIM38O00635 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
TRIM38O00635 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM38O00635 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms