Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 BSCL2-219ENST00000526426 353 ntTSL 38.14□□□□□ -1.114e-7■■■■■ 133.7
SF3B1O75533 GDAP2-203ENST00000464026 1109 ntTSL 28.13□□□□□ -1.114e-7■■■■■ 133.7
SF3B1O75533 LINC00094-207ENST00000624381 772 ntTSL 58.08□□□□□ -1.124e-7■■■■■ 133.7
SF3B1O75533 TMEM2-210ENST00000542935 5372 ntTSL 1 (best)8.06□□□□□ -1.124e-7■■■■■ 133.7
SF3B1O75533 LDHB-208ENST00000539782 487 ntTSL 38□□□□□ -1.134e-7■■■■■ 133.7
SF3B1O75533 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.134e-7■■■■■ 133.7
SF3B1O75533 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.95□□□□□ -1.144e-7■■■■■ 133.7
SF3B1O75533 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC7.93□□□□□ -1.143e-6■■■■■ 133.7
SF3B1O75533 USP46-208ENST00000512656 467 ntTSL 37.93□□□□□ -1.144e-7■■■■■ 133.7
SF3B1O75533 PRKCQ-204ENST00000610727 3077 ntTSL 5 BASIC7.92□□□□□ -1.144e-7■■■■■ 133.7
SF3B1O75533 FADS2-206ENST00000518606 510 ntTSL 47.82□□□□□ -1.164e-7■■■■■ 133.7
SF3B1O75533 GPATCH2L-208ENST00000556372 539 ntTSL 37.82□□□□□ -1.164e-7■■■■■ 133.7
SF3B1O75533 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC7.77□□□□□ -1.174e-7■■■■■ 133.7
SF3B1O75533 DST-231ENST00000523967 2904 ntTSL 27.63□□□□□ -1.194e-7■■■■■ 133.7
SF3B1O75533 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC7.61□□□□□ -1.194e-7■■■■■ 133.7
SF3B1O75533 JAZF1-203ENST00000427814 2919 ntTSL 1 (best)7.58□□□□□ -1.24e-7■■■■■ 133.7
SF3B1O75533 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC7.54□□□□□ -1.24e-7■■■■■ 133.7
SF3B1O75533 FADS2-208ENST00000521571 799 ntTSL 37.54□□□□□ -1.24e-7■■■■■ 133.7
SF3B1O75533 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC7.52□□□□□ -1.214e-7■■■■■ 133.7
SF3B1O75533 ZNF788-201ENST00000397755 3246 ntTSL 27.45□□□□□ -1.224e-7■■■■■ 133.7
SF3B1O75533 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC7.42□□□□□ -1.224e-7■■■■■ 133.7
SF3B1O75533 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.234e-7■■■■■ 133.7
SF3B1O75533 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.32□□□□□ -1.244e-7■■■■■ 133.7
SF3B1O75533 ZNF788-207ENST00000601686 546 ntTSL 47.32□□□□□ -1.244e-7■■■■■ 133.7
SF3B1O75533 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC7.31□□□□□ -1.244e-7■■■■■ 133.7
SF3B1O75533 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC7.29□□□□□ -1.244e-7■■■■■ 133.7
SF3B1O75533 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.254e-7■■■■■ 133.7
SF3B1O75533 VPS8-216ENST00000463687 568 ntTSL 47.23□□□□□ -1.252e-13■■■■■ 133.7
SF3B1O75533 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC7.22□□□□□ -1.254e-7■■■■■ 133.7
SF3B1O75533 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC7.19□□□□□ -1.264e-7■■■■■ 133.7
SF3B1O75533 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.18□□□□□ -1.264e-7■■■■■ 133.7
SF3B1O75533 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC7.13□□□□□ -1.274e-7■■■■■ 133.7
SF3B1O75533 TMEM108-208ENST00000512662 874 ntAPPRIS ALT2 TSL 57.07□□□□□ -1.283e-6■■■■■ 133.7
SF3B1O75533 JAZF1-202ENST00000420835 562 ntTSL 46.98□□□□□ -1.294e-7■■■■■ 133.7
SF3B1O75533 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.34e-7■■■■■ 133.7
SF3B1O75533 IFT80-215ENST00000478370 579 ntTSL 46.96□□□□□ -1.34e-7■■■■■ 133.7
SF3B1O75533 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.92□□□□□ -1.34e-7■■■■■ 133.7
SF3B1O75533 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.92□□□□□ -1.34e-7■■■■■ 133.7
SF3B1O75533 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.91□□□□□ -1.34e-7■■■■■ 133.7
SF3B1O75533 SMG1-217ENST00000569764 4187 ntTSL 56.9□□□□□ -1.34e-7■■■■■ 133.7
SF3B1O75533 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.89□□□□□ -1.314e-7■■■■■ 133.7
SF3B1O75533 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.86□□□□□ -1.314e-7■■■■■ 133.7
SF3B1O75533 CHN2-219ENST00000470261 570 ntTSL 36.65□□□□□ -1.354e-7■■■■■ 133.7
SF3B1O75533 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.354e-7■■■■■ 133.7
SF3B1O75533 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.56□□□□□ -1.364e-7■■■■■ 133.7
SF3B1O75533 BTBD8-203ENST00000642070 759 nt6.55□□□□□ -1.364e-7■■■■■ 133.7
SF3B1O75533 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.51□□□□□ -1.374e-7■■■■■ 133.7
SF3B1O75533 NT5C2-202ENST00000369857 2625 ntTSL 26.5□□□□□ -1.374e-7■■■■■ 133.7
SF3B1O75533 EP300-203ENST00000634690 559 ntTSL 56.47□□□□□ -1.374e-7■■■■■ 133.7
SF3B1O75533 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.45□□□□□ -1.384e-7■■■■■ 133.7
SF3B1O75533 HIF1AN-204ENST00000528044 559 ntTSL 46.4□□□□□ -1.392e-13■■■■■ 133.7
SF3B1O75533 TMEM108-210ENST00000514894 823 ntAPPRIS ALT2 TSL 26.37□□□□□ -1.393e-6■■■■■ 133.7
SF3B1O75533 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.35□□□□□ -1.394e-7■■■■■ 133.7
SF3B1O75533 EP300-204ENST00000634728 401 ntTSL 56.34□□□□□ -1.394e-7■■■■■ 133.7
SF3B1O75533 SAP30BP-218ENST00000583063 538 ntTSL 46.34□□□□□ -1.394e-7■■■■■ 133.7
SF3B1O75533 BX322639.1-203ENST00000609034 576 ntTSL 36.3□□□□□ -1.44e-7■■■■■ 133.7
SF3B1O75533 TMEM69-202ENST00000496366 722 ntTSL 26.29□□□□□ -1.44e-7■■■■■ 133.7
SF3B1O75533 IFT80-221ENST00000484963 382 ntTSL 56.28□□□□□ -1.44e-7■■■■■ 133.7
SF3B1O75533 RFC2-209ENST00000491206 726 ntTSL 36.2□□□□□ -1.424e-7■■■■■ 133.7
SF3B1O75533 USP46-206ENST00000506707 536 ntTSL 26.16□□□□□ -1.424e-7■■■■■ 133.7
SF3B1O75533 ZNF83-214ENST00000600457 596 ntTSL 46.12□□□□□ -1.434e-7■■■■■ 133.7
SF3B1O75533 ANXA4-210ENST00000484219 338 ntTSL 56.11□□□□□ -1.434e-7■■■■■ 133.7
SF3B1O75533 TMEM108-207ENST00000512137 681 ntAPPRIS ALT2 TSL 36.1□□□□□ -1.433e-6■■■■■ 133.7
SF3B1O75533 DST-222ENST00000520645 4598 ntTSL 26.03□□□□□ -1.444e-7■■■■■ 133.7
SF3B1O75533 BSCL2-208ENST00000412351 491 ntTSL 36.02□□□□□ -1.454e-7■■■■■ 133.7
SF3B1O75533 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.454e-7■■■■■ 133.7
SF3B1O75533 ZNF83-212ENST00000598190 937 ntTSL 25.98□□□□□ -1.454e-7■■■■■ 133.7
SF3B1O75533 MTFR1-204ENST00000517944 1017 ntTSL 35.84□□□□□ -1.474e-7■■■■■ 133.7
SF3B1O75533 GPHN-205ENST00000544752 2514 ntTSL 25.82□□□□□ -1.484e-7■■■■■ 133.7
SF3B1O75533 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.78□□□□□ -1.484e-7■■■■■ 133.7
SF3B1O75533 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.77□□□□□ -1.494e-7■■■■■ 133.7
SF3B1O75533 MTM1-202ENST00000370393 607 ntTSL 55.74□□□□□ -1.494e-7■■■■■ 133.7
SF3B1O75533 COG3-202ENST00000465942 928 ntTSL 35.74□□□□□ -1.494e-7■■■■■ 133.7
SF3B1O75533 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.514e-7■■■■■ 133.7
SF3B1O75533 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.63□□□□□ -1.514e-7■■■■■ 133.7
SF3B1O75533 TMEM55B-204ENST00000553602 382 ntTSL 25.46□□□□□ -1.544e-7■■■■■ 133.7
SF3B1O75533 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.544e-7■■■■■ 133.7
SF3B1O75533 MSL2-205ENST00000491050 559 ntTSL 45.42□□□□□ -1.544e-7■■■■■ 133.7
SF3B1O75533 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.554e-7■■■■■ 133.7
SF3B1O75533 CHM-202ENST00000467744 2040 ntTSL 55.2□□□□□ -1.584e-7■■■■■ 133.7
SF3B1O75533 PQLC3-209ENST00000487471 466 ntTSL 25.16□□□□□ -1.584e-7■■■■■ 133.7
SF3B1O75533 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.594e-7■■■■■ 133.7
SF3B1O75533 AC093607.1-201ENST00000514290 451 ntTSL 45.12□□□□□ -1.594e-7■■■■■ 133.7
SF3B1O75533 ZNF232-207ENST00000575538 574 ntTSL 54.99□□□□□ -1.614e-7■■■■■ 133.7
SF3B1O75533 MTM1-201ENST00000306167 2955 ntTSL 54.92□□□□□ -1.624e-7■■■■■ 133.7
SF3B1O75533 MTFR1-207ENST00000518800 2393 ntTSL 1 (best)4.85□□□□□ -1.634e-7■■■■■ 133.7
SF3B1O75533 DST-226ENST00000522538 565 ntTSL 44.85□□□□□ -1.634e-7■■■■■ 133.7
SF3B1O75533 LMLN-208ENST00000476356 567 ntTSL 44.8□□□□□ -1.644e-7■■■■■ 133.7
SF3B1O75533 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.654e-7■■■■■ 133.7
SF3B1O75533 DST-229ENST00000523817 545 ntTSL 54.68□□□□□ -1.664e-7■■■■■ 133.7
SF3B1O75533 NT5C2-205ENST00000452156 856 ntTSL 54.59□□□□□ -1.674e-7■■■■■ 133.7
SF3B1O75533 IFT80-204ENST00000465537 860 ntTSL 54.59□□□□□ -1.674e-7■■■■■ 133.7
SF3B1O75533 GPHN-207ENST00000555456 841 ntTSL 24.49□□□□□ -1.694e-7■■■■■ 133.7
SF3B1O75533 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.42□□□□□ -1.74e-7■■■■■ 133.7
SF3B1O75533 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.4□□□□□ -1.714e-7■■■■■ 133.7
SF3B1O75533 RIC1-207ENST00000545641 3998 ntTSL 1 (best)4.35□□□□□ -1.714e-7■■■■■ 133.7
SF3B1O75533 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.34□□□□□ -1.714e-7■■■■■ 133.7
SF3B1O75533 SRGAP2-208ENST00000604133 542 ntTSL 54.25□□□□□ -1.734e-7■■■■■ 133.7
SF3B1O75533 ANXA5-205ENST00000509648 1083 ntTSL 24.24□□□□□ -1.734e-7■■■■■ 133.7
SF3B1O75533 NT5C2-208ENST00000467380 427 ntTSL 34.22□□□□□ -1.734e-7■■■■■ 133.7
Retrieved 100 of 46,956 protein–RNA pairs in 1344.5 ms