RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 AEBP2Q6ZN18 517 aaPredicted RBP25.57■■□□□ 1.68
USP46-208ENST00000512656 CHIC1Q5VXU3 224 aa24.55■■□□□ 1.52
USP46-208ENST00000512656 SENP3Q9H4L4 574 aaPredicted RBP21.9■■□□□ 1.1
USP46-208ENST00000512656 PHF23Q9BUL5 403 aaPredicted RBP21.57■■□□□ 1.04
USP46-208ENST00000512656 FOXD1Q16676 465 aa20.29■□□□□ 0.84
USP46-208ENST00000512656 PLPPR3Q6T4P5 718 aa19.73■□□□□ 0.75
USP46-208ENST00000512656 PPP6R1Q9UPN7 881 aa19.09■□□□□ 0.65
USP46-208ENST00000512656 MSH5O43196 834 aa19.03■□□□□ 0.64
USP46-208ENST00000512656 ADRA2BP18089 450 aa19.03■□□□□ 0.64
USP46-208ENST00000512656 PIAS4Q8N2W9 510 aaPredicted RBP19.02■□□□□ 0.64
USP46-208ENST00000512656 POTEDQ86YR6 584 aa18.14■□□□□ 0.49
USP46-208ENST00000512656 NISCHQ9Y2I1 1504 aa17.81■□□□□ 0.44
USP46-208ENST00000512656 SCAF1Q9H7N4 1312 aaKnown RBP17.57■□□□□ 0.4
USP46-208ENST00000512656 MAPK8IP2Q13387 824 aaPredicted RBP17.39■□□□□ 0.37
USP46-208ENST00000512656 DMRT2Q9Y5R5 561 aa17.38■□□□□ 0.37
USP46-208ENST00000512656 PPP4R3CPQ6ZMV5 832 aa17.27■□□□□ 0.36
USP46-208ENST00000512656 CNKSR2Q8WXI2 1034 aa16.96■□□□□ 0.31
USP46-208ENST00000512656 HOXD11P31277 338 aaPredicted RBP16.83■□□□□ 0.28
USP46-208ENST00000512656 RNF216Q9NWF9 866 aaPredicted RBP16.76■□□□□ 0.27
USP46-208ENST00000512656 NCBP3Q53F19 620 aaKnown RBP16.75■□□□□ 0.27
USP46-208ENST00000512656 DCAF8L1A6NGE4 600 aa16.54■□□□□ 0.24
USP46-208ENST00000512656 NPM3O75607 178 aaKnown RBP16.41■□□□□ 0.22
USP46-208ENST00000512656 DNAJC5BQ9UF47 199 aa16.35■□□□□ 0.21
USP46-208ENST00000512656 KCNA4P22459 653 aa16.23■□□□□ 0.19
USP46-208ENST00000512656 RNF39Q9H2S5 420 aa16.21■□□□□ 0.19
USP46-208ENST00000512656 CACNB1Q02641 598 aaPredicted RBP16.12■□□□□ 0.17
USP46-208ENST00000512656 C1QBPQ07021 282 aaKnown RBP16.04■□□□□ 0.16
USP46-208ENST00000512656 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.98■□□□□ 0.15
USP46-208ENST00000512656 CCDC180Q9P1Z9 1646 aa15.96■□□□□ 0.15
USP46-208ENST00000512656 ABCC9O60706 1549 aa15.95■□□□□ 0.14
USP46-208ENST00000512656 U3KPZ7 1027 aaPredicted RBP15.65■□□□□ 0.1
USP46-208ENST00000512656 SLC4A2P04920 1241 aa15.61■□□□□ 0.09
USP46-208ENST00000512656 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.41■□□□□ 0.06
USP46-208ENST00000512656 HNRNPUL2Q1KMD3 747 aaKnown RBP15.41■□□□□ 0.06
USP46-208ENST00000512656 SLC4A1APQ9BWU0 796 aaKnown RBP15.4■□□□□ 0.06
USP46-208ENST00000512656 APLP2Q06481 763 aa15.39■□□□□ 0.05
USP46-208ENST00000512656 SPINK5Q9NQ38 1064 aaPredicted RBP15.33■□□□□ 0.04
USP46-208ENST00000512656 CAPN15O75808 1086 aa15.31■□□□□ 0.04
USP46-208ENST00000512656 SAMD1Q6SPF0 538 aaPredicted RBP15.3■□□□□ 0.04
USP46-208ENST00000512656 MYCNP04198 464 aaPredicted RBP15.24■□□□□ 0.03
USP46-208ENST00000512656 DSG3P32926 999 aa15.22■□□□□ 0.03
USP46-208ENST00000512656 RB1CC1Q8TDY2 1594 aa15.22■□□□□ 0.03
USP46-208ENST00000512656 ZNF219Q9P2Y4 722 aaPredicted RBP15.2■□□□□ 0.02
USP46-208ENST00000512656 FOXD4L1Q9NU39 408 aa15.16■□□□□ 0.02
USP46-208ENST00000512656 NACADO15069 1562 aa15.12■□□□□ 0.01
USP46-208ENST00000512656 TRHP20396 242 aaPredicted RBP15.1■□□□□ 0.01
USP46-208ENST00000512656 DCAF8L2P0C7V8 631 aa15.07■□□□□ 0
USP46-208ENST00000512656 MYO15BQ96JP2 1530 aa14.93□□□□□ -0.02
USP46-208ENST00000512656 ABCB7O75027 752 aa14.92□□□□□ -0.02
USP46-208ENST00000512656 ZBTB22O15209 634 aa14.91□□□□□ -0.02
USP46-208ENST00000512656 PABPN1Q86U42 306 aaKnown RBP eCLIP14.87□□□□□ -0.03
USP46-208ENST00000512656 ATXN8OSP0DMR3 200 aa14.77□□□□□ -0.05
USP46-208ENST00000512656 POLA2Q14181 598 aa14.77□□□□□ -0.05
USP46-208ENST00000512656 UNC13AQ9UPW8 1703 aa14.75□□□□□ -0.05
USP46-208ENST00000512656 ATF5Q9Y2D1 282 aaPredicted RBP14.75□□□□□ -0.05
USP46-208ENST00000512656 ZCCHC6Q5VYS8 1495 aaKnown RBP14.75□□□□□ -0.05
USP46-208ENST00000512656 DCAF1Q9Y4B6 1507 aa14.73□□□□□ -0.05
USP46-208ENST00000512656 BICRAQ9NZM4 1560 aa14.72□□□□□ -0.05
USP46-208ENST00000512656 ZBTB12Q9Y330 459 aaPredicted RBP14.62□□□□□ -0.07
USP46-208ENST00000512656 SHROOM4Q9ULL8 1493 aa14.62□□□□□ -0.07
USP46-208ENST00000512656 RBM42Q9BTD8 480 aaKnown RBP14.6□□□□□ -0.07
USP46-208ENST00000512656 SCRIBQ14160 1630 aa14.52□□□□□ -0.08
USP46-208ENST00000512656 CSRNP3Q8WYN3 585 aa14.43□□□□□ -0.1
USP46-208ENST00000512656 CECR2Q9BXF3 1484 aa14.39□□□□□ -0.11
USP46-208ENST00000512656 CC2D2AQ9P2K1 1620 aa14.39□□□□□ -0.11
USP46-208ENST00000512656 EIF4G1Q04637 1599 aaKnown RBP14.38□□□□□ -0.11
USP46-208ENST00000512656 AKT1S1Q96B36 256 aa14.29□□□□□ -0.12
USP46-208ENST00000512656 FBLN2P98095 1184 aa14.28□□□□□ -0.12
USP46-208ENST00000512656 POTEHQ6S545 545 aa14.27□□□□□ -0.13
USP46-208ENST00000512656 OSCARQ8IYS5 282 aa14.27□□□□□ -0.13
USP46-208ENST00000512656 EHMT2Q96KQ7 1210 aa14.26□□□□□ -0.13
USP46-208ENST00000512656 SPDYE2BA6NHP3 402 aa14.14□□□□□ -0.15
USP46-208ENST00000512656 SPDYE6P0CI01 402 aa14.14□□□□□ -0.15
USP46-208ENST00000512656 SPDYE2Q495Y8 402 aa14.14□□□□□ -0.15
USP46-208ENST00000512656 CHRDL2Q6WN34 429 aa14.13□□□□□ -0.15
USP46-208ENST00000512656 MKRN4PQ13434 485 aaPredicted RBP14.11□□□□□ -0.15
USP46-208ENST00000512656 REM2Q8IYK8 340 aaPredicted RBP14.1□□□□□ -0.15
USP46-208ENST00000512656 NCAPD3P42695 1498 aa13.96□□□□□ -0.17
USP46-208ENST00000512656 SSUH2Q9Y2M2 353 aa13.95□□□□□ -0.18
USP46-208ENST00000512656 ZNF692Q9BU19 519 aaPredicted RBP13.94□□□□□ -0.18
USP46-208ENST00000512656 PITPNM1O00562 1244 aa13.91□□□□□ -0.18
USP46-208ENST00000512656 ATAD2BQ9ULI0 1458 aa13.9□□□□□ -0.18
USP46-208ENST00000512656 SMARCA2P51531 1590 aa13.89□□□□□ -0.19
USP46-208ENST00000512656 SMARCA4P51532 1647 aa13.87□□□□□ -0.19
USP46-208ENST00000512656 HMGXB3Q12766 1538 aa13.85□□□□□ -0.19
USP46-208ENST00000512656 BAZ1AQ9NRL2 1556 aaPredicted RBP13.83□□□□□ -0.19
USP46-208ENST00000512656 SPDYE1Q8NFV5 336 aaPredicted RBP13.83□□□□□ -0.2
USP46-208ENST00000512656 ERCC6Q03468 1493 aa13.82□□□□□ -0.2
USP46-208ENST00000512656 PIP4P2Q8N4L2 257 aa13.82□□□□□ -0.2
USP46-208ENST00000512656 FXR2P51116 673 aaKnown RBP eCLIP13.81□□□□□ -0.2
USP46-208ENST00000512656 CUX2O14529 1486 aa13.79□□□□□ -0.2
USP46-208ENST00000512656 BAZ1BQ9UIG0 1483 aaKnown RBP13.79□□□□□ -0.2
USP46-208ENST00000512656 DNAJC5Q9H3Z4 198 aa13.77□□□□□ -0.21
USP46-208ENST00000512656 PEG3Q9GZU2 1588 aa13.75□□□□□ -0.21
USP46-208ENST00000512656 MROH2BQ7Z745 1585 aa13.7□□□□□ -0.22
USP46-208ENST00000512656 CLEC11AQ9Y240 323 aa13.69□□□□□ -0.22
USP46-208ENST00000512656 NESP48681 1621 aa13.68□□□□□ -0.22
USP46-208ENST00000512656 LAMC3Q9Y6N6 1575 aa13.63□□□□□ -0.23
USP46-208ENST00000512656 PDS5BQ9NTI5 1447 aa13.6□□□□□ -0.23
USP46-208ENST00000512656 SPDYE4A6NLX3 237 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms