RNA–Protein interactions for RNA: ENST00000441222.7

USP46-201, Transcript of ubiquitin specific peptidase 46, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP46, Length 7,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-201ENST00000441222 DCAF8L2P0C7V8 631 aa11.09□□□□□ -0.63
USP46-201ENST00000441222 PELP1Q8IZL8 1130 aaKnown RBP10.91□□□□□ -0.66
USP46-201ENST00000441222 SUPT5HO00267 1087 aaKnown RBP10.48□□□□□ -0.73
USP46-201ENST00000441222 FAM9AQ8IZU1 332 aaPredicted RBP10.47□□□□□ -0.73
USP46-201ENST00000441222 APLP2Q06481 763 aa10.45□□□□□ -0.74
USP46-201ENST00000441222 CCER1Q8TC90 406 aaPredicted RBP10.41□□□□□ -0.74
USP46-201ENST00000441222 ERICH6Q7L0X2 663 aa10.33□□□□□ -0.76
USP46-201ENST00000441222 CENPBP07199 599 aaPredicted RBP10.22□□□□□ -0.77
USP46-201ENST00000441222 MYT1Q01538 1121 aa10.21□□□□□ -0.78
USP46-201ENST00000441222 NISCHQ9Y2I1 1504 aa10.19□□□□□ -0.78
USP46-201ENST00000441222 EHMT2Q96KQ7 1210 aa10.15□□□□□ -0.78
USP46-201ENST00000441222 ZEB1P37275 1124 aaPredicted RBP10.15□□□□□ -0.79
USP46-201ENST00000441222 SHROOM4Q9ULL8 1493 aa10.14□□□□□ -0.79
USP46-201ENST00000441222 NEFLP07196 543 aa10.07□□□□□ -0.8
USP46-201ENST00000441222 PCGF6Q9BYE7 350 aa9.98□□□□□ -0.81
USP46-201ENST00000441222 YTHDC1Q96MU7 727 aaKnown RBP9.96□□□□□ -0.81
USP46-201ENST00000441222 DAXXQ9UER7 740 aaPredicted RBP9.91□□□□□ -0.82
USP46-201ENST00000441222 ATP1B4Q9UN42 357 aaPredicted RBP9.88□□□□□ -0.83
USP46-201ENST00000441222 TTBK1Q5TCY1 1321 aaPredicted RBP9.87□□□□□ -0.83
USP46-201ENST00000441222 TRIM41Q8WV44 630 aa9.82□□□□□ -0.84
USP46-201ENST00000441222 UBTFP17480 764 aaKnown RBP9.8□□□□□ -0.84
USP46-201ENST00000441222 RANGAP1P46060 587 aaPredicted RBP9.77□□□□□ -0.85
USP46-201ENST00000441222 MYT1LQ9UL68 1186 aa9.62□□□□□ -0.87
USP46-201ENST00000441222 ZNF316A6NFI3 1004 aaPredicted RBP9.61□□□□□ -0.87
USP46-201ENST00000441222 RTL5Q5HYW3 569 aaPredicted RBP9.61□□□□□ -0.87
USP46-201ENST00000441222 TRIM26Q12899 539 aaPredicted RBP9.59□□□□□ -0.87
USP46-201ENST00000441222 POLR3GLQ9BT43 218 aa9.55□□□□□ -0.88
USP46-201ENST00000441222 CLSPNQ9HAW4 1339 aa9.55□□□□□ -0.88
USP46-201ENST00000441222 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.52□□□□□ -0.89
USP46-201ENST00000441222 HNRNPUL2Q1KMD3 747 aaKnown RBP9.52□□□□□ -0.89
USP46-201ENST00000441222 SLC4A1APQ9BWU0 796 aaKnown RBP9.48□□□□□ -0.89
USP46-201ENST00000441222 ZBTB47Q9UFB7 747 aaPredicted RBP9.46□□□□□ -0.9
USP46-201ENST00000441222 HRCP23327 699 aa9.44□□□□□ -0.9
USP46-201ENST00000441222 ITGAEP38570 1179 aa9.43□□□□□ -0.9
USP46-201ENST00000441222 PPARGC1BQ86YN6 1023 aaKnown RBP9.37□□□□□ -0.91
USP46-201ENST00000441222 CNGB1Q14028 1251 aaPredicted RBP9.33□□□□□ -0.92
USP46-201ENST00000441222 CDK11AQ9UQ88 783 aaPredicted RBP9.33□□□□□ -0.92
USP46-201ENST00000441222 CHIC1Q5VXU3 224 aa9.32□□□□□ -0.92
USP46-201ENST00000441222 DIEXFQ68CQ4 756 aaKnown RBP9.32□□□□□ -0.92
USP46-201ENST00000441222 NEFMP07197 916 aa9.32□□□□□ -0.92
USP46-201ENST00000441222 ANP32CO43423 234 aa9.27□□□□□ -0.92
USP46-201ENST00000441222 ANP32BQ92688 251 aaKnown RBP9.27□□□□□ -0.93
USP46-201ENST00000441222 CANXP27824 592 aaKnown RBP9.24□□□□□ -0.93
USP46-201ENST00000441222 FAM50AQ14320 339 aaKnown RBP9.24□□□□□ -0.93
USP46-201ENST00000441222 TRIM52Q96A61 297 aa9.24□□□□□ -0.93
USP46-201ENST00000441222 ANP32AP39687 249 aaKnown RBP9.22□□□□□ -0.93
USP46-201ENST00000441222 SLC24A1O60721 1099 aa9.19□□□□□ -0.94
USP46-201ENST00000441222 GLIPR1L2Q4G1C9 344 aa9.18□□□□□ -0.94
USP46-201ENST00000441222 UPF2Q9HAU5 1272 aaKnown RBP9.15□□□□□ -0.95
USP46-201ENST00000441222 NEUROD1Q13562 356 aa9.14□□□□□ -0.95
USP46-201ENST00000441222 HSP90AA1P07900 732 aaKnown RBP9.13□□□□□ -0.95
USP46-201ENST00000441222 LOC105371045A0A1W2PR82 267 aa9.13□□□□□ -0.95
USP46-201ENST00000441222 BCANQ96GW7 911 aa9.1□□□□□ -0.95
USP46-201ENST00000441222 ZNF326Q5BKZ1 582 aaKnown RBP9.1□□□□□ -0.95
USP46-201ENST00000441222 GTF3C3Q9Y5Q9 886 aa9.08□□□□□ -0.96
USP46-201ENST00000441222 BCL11AQ9H165 835 aa9.05□□□□□ -0.96
USP46-201ENST00000441222 CDK11BP21127 795 aaKnown RBP9.04□□□□□ -0.96
USP46-201ENST00000441222 ESF1Q9H501 851 aaKnown RBP9.03□□□□□ -0.96
USP46-201ENST00000441222 EIF5BO60841 1220 aaKnown RBP9.02□□□□□ -0.96
USP46-201ENST00000441222 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.01□□□□□ -0.97
USP46-201ENST00000441222 NPM2Q86SE8 214 aaKnown RBP8.98□□□□□ -0.97
USP46-201ENST00000441222 ANP32EQ9BTT0 268 aa8.97□□□□□ -0.97
USP46-201ENST00000441222 FBLN2P98095 1184 aa8.96□□□□□ -0.98
USP46-201ENST00000441222 STAG3Q9UJ98 1225 aa8.95□□□□□ -0.98
USP46-201ENST00000441222 TONSLQ96HA7 1378 aa8.93□□□□□ -0.98
USP46-201ENST00000441222 ACIN1Q9UKV3 1341 aaKnown RBP8.93□□□□□ -0.98
USP46-201ENST00000441222 MYH16Q9H6N6 1097 aa8.92□□□□□ -0.98
USP46-201ENST00000441222 TNNT2P45379 298 aaPredicted RBP8.91□□□□□ -0.98
USP46-201ENST00000441222 NCLP19338 710 aaKnown RBP8.89□□□□□ -0.99
USP46-201ENST00000441222 TMC1Q8TDI8 760 aa8.89□□□□□ -0.99
USP46-201ENST00000441222 CCDC136Q96JN2 1154 aa8.89□□□□□ -0.99
USP46-201ENST00000441222 BECN1Q14457 450 aa8.88□□□□□ -0.99
USP46-201ENST00000441222 WDR43Q15061 677 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP46-201ENST00000441222 FKBP8Q14318 412 aa8.87□□□□□ -0.99
USP46-201ENST00000441222 GOLGA6L22H0YM25 854 aa8.87□□□□□ -0.99
USP46-201ENST00000441222 HNRNPUQ00839 825 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP46-201ENST00000441222 NPM1P06748 294 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP46-201ENST00000441222 TRIM44Q96DX7 344 aaPredicted RBP8.87□□□□□ -0.99
USP46-201ENST00000441222 DDRGK1Q96HY6 314 aa8.87□□□□□ -0.99
USP46-201ENST00000441222 ZNF777Q9ULD5 760 aaPredicted RBP8.86□□□□□ -0.99
USP46-201ENST00000441222 CHGAP10645 457 aaKnown RBP8.85□□□□□ -0.99
USP46-201ENST00000441222 ZRSR1Q15695 479 aaKnown RBP8.84□□□□□ -0.99
USP46-201ENST00000441222 FAM9BQ8IZU0 186 aa8.82□□□□□ -1
USP46-201ENST00000441222 CSRNP3Q8WYN3 585 aa8.81□□□□□ -1
USP46-201ENST00000441222 CASC1Q6TDU7 716 aa8.8□□□□□ -1
USP46-201ENST00000441222 ABCC9O60706 1549 aa8.78□□□□□ -1
USP46-201ENST00000441222 P3H3Q8IVL6 736 aa8.78□□□□□ -1
USP46-201ENST00000441222 NBR1Q14596 966 aa8.78□□□□□ -1
USP46-201ENST00000441222 PABPN1Q86U42 306 aaKnown RBP eCLIP8.78□□□□□ -1
USP46-201ENST00000441222 TSPY4P0CV99 314 aa8.76□□□□□ -1.01
USP46-201ENST00000441222 TSPY10P0CW01 314 aa8.76□□□□□ -1.01
USP46-201ENST00000441222 NRDCO43847 1150 aa8.75□□□□□ -1.01
USP46-201ENST00000441222 DDX10Q13206 875 aaKnown RBP8.75□□□□□ -1.01
USP46-201ENST00000441222 GOLGA6L6A8MZA4 724 aa8.75□□□□□ -1.01
USP46-201ENST00000441222 PTMAP06454 111 aaKnown RBP8.75□□□□□ -1.01
USP46-201ENST00000441222 ARXQ96QS3 562 aa8.75□□□□□ -1.01
USP46-201ENST00000441222 ERICH6BQ5W0A0 696 aa8.74□□□□□ -1.01
USP46-201ENST00000441222 SALL2Q9Y467 1007 aaPredicted RBP8.74□□□□□ -1.01
USP46-201ENST00000441222 CHMP4BQ9H444 224 aaKnown RBP8.74□□□□□ -1.01
USP46-201ENST00000441222 MRS2Q9HD23 443 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms