RNA–Protein interactions for RNA: ENST00000569764.1

SMG1-217, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 4,187 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-217ENST00000569764 NISCHQ9Y2I1 1504 aa13.39□□□□□ -0.27
SMG1-217ENST00000569764 SLC24A1O60721 1099 aa12.83□□□□□ -0.36
SMG1-217ENST00000569764 DCAF8L2P0C7V8 631 aa12.19□□□□□ -0.46
SMG1-217ENST00000569764 EHMT2Q96KQ7 1210 aa12.04□□□□□ -0.48
SMG1-217ENST00000569764 ABCC9O60706 1549 aa11.75□□□□□ -0.53
SMG1-217ENST00000569764 PLPPR3Q6T4P5 718 aa11.67□□□□□ -0.54
SMG1-217ENST00000569764 MYT1Q01538 1121 aa11.64□□□□□ -0.55
SMG1-217ENST00000569764 DAXXQ9UER7 740 aaPredicted RBP11.64□□□□□ -0.55
SMG1-217ENST00000569764 RTN4Q9NQC3 1192 aaKnown RBP11.52□□□□□ -0.57
SMG1-217ENST00000569764 PRKCSHP14314 528 aaPredicted RBP11.51□□□□□ -0.57
SMG1-217ENST00000569764 CCDC180Q9P1Z9 1646 aa11.48□□□□□ -0.57
SMG1-217ENST00000569764 PELP1Q8IZL8 1130 aaKnown RBP11.46□□□□□ -0.58
SMG1-217ENST00000569764 ERICH6Q7L0X2 663 aa11.43□□□□□ -0.58
SMG1-217ENST00000569764 TTBK1Q5TCY1 1321 aaPredicted RBP11.41□□□□□ -0.58
SMG1-217ENST00000569764 RB1CC1Q8TDY2 1594 aa11.3□□□□□ -0.6
SMG1-217ENST00000569764 ZCCHC6Q5VYS8 1495 aaKnown RBP11.27□□□□□ -0.6
SMG1-217ENST00000569764 NCBP3Q53F19 620 aaKnown RBP11.26□□□□□ -0.61
SMG1-217ENST00000569764 CHIC1Q5VXU3 224 aa11.25□□□□□ -0.61
SMG1-217ENST00000569764 SHROOM4Q9ULL8 1493 aa11.23□□□□□ -0.61
SMG1-217ENST00000569764 APLP2Q06481 763 aa11.2□□□□□ -0.62
SMG1-217ENST00000569764 NACADO15069 1562 aa11.16□□□□□ -0.62
SMG1-217ENST00000569764 PABPN1Q86U42 306 aaKnown RBP eCLIP11.13□□□□□ -0.63
SMG1-217ENST00000569764 FAM9AQ8IZU1 332 aaPredicted RBP11.12□□□□□ -0.63
SMG1-217ENST00000569764 RANGAP1P46060 587 aaPredicted RBP11□□□□□ -0.65
SMG1-217ENST00000569764 TIMELESSQ9UNS1 1208 aa10.98□□□□□ -0.65
SMG1-217ENST00000569764 AMER1Q5JTC6 1135 aaPredicted RBP10.97□□□□□ -0.65
SMG1-217ENST00000569764 EIF5BO60841 1220 aaKnown RBP10.95□□□□□ -0.66
SMG1-217ENST00000569764 DCAF1Q9Y4B6 1507 aa10.94□□□□□ -0.66
SMG1-217ENST00000569764 TULP1O00294 542 aaPredicted RBP10.92□□□□□ -0.66
SMG1-217ENST00000569764 KCNA4P22459 653 aa10.92□□□□□ -0.66
SMG1-217ENST00000569764 MYO15BQ96JP2 1530 aa10.84□□□□□ -0.67
SMG1-217ENST00000569764 ARXQ96QS3 562 aa10.83□□□□□ -0.68
SMG1-217ENST00000569764 SUPT5HO00267 1087 aaKnown RBP10.82□□□□□ -0.68
SMG1-217ENST00000569764 KLHL34Q8N239 644 aa10.78□□□□□ -0.68
SMG1-217ENST00000569764 SCRIBQ14160 1630 aa10.77□□□□□ -0.69
SMG1-217ENST00000569764 CSRNP3Q8WYN3 585 aa10.73□□□□□ -0.69
SMG1-217ENST00000569764 PODXL2Q9NZ53 605 aa10.73□□□□□ -0.69
SMG1-217ENST00000569764 ERCC6Q03468 1493 aa10.71□□□□□ -0.7
SMG1-217ENST00000569764 CECR2Q9BXF3 1484 aa10.68□□□□□ -0.7
SMG1-217ENST00000569764 TPRNQ4KMQ1 711 aa10.66□□□□□ -0.7
SMG1-217ENST00000569764 PLEKHG5O94827 1062 aa10.66□□□□□ -0.7
SMG1-217ENST00000569764 TAOK2Q9UL54 1235 aa10.65□□□□□ -0.7
SMG1-217ENST00000569764 HOMEZQ8IX15 550 aa10.65□□□□□ -0.71
SMG1-217ENST00000569764 UNC13AQ9UPW8 1703 aa10.57□□□□□ -0.72
SMG1-217ENST00000569764 PDS5BQ9NTI5 1447 aa10.5□□□□□ -0.73
SMG1-217ENST00000569764 RSF1Q96T23 1441 aaPredicted RBP10.5□□□□□ -0.73
SMG1-217ENST00000569764 AEBP2Q6ZN18 517 aaPredicted RBP10.49□□□□□ -0.73
SMG1-217ENST00000569764 NPM1P06748 294 aaKnown RBP eCLIP10.47□□□□□ -0.73
SMG1-217ENST00000569764 BCL11AQ9H165 835 aa10.45□□□□□ -0.74
SMG1-217ENST00000569764 MROH2BQ7Z745 1585 aa10.45□□□□□ -0.74
SMG1-217ENST00000569764 BCANQ96GW7 911 aa10.45□□□□□ -0.74
SMG1-217ENST00000569764 C14orf37Q86TY3 774 aa10.42□□□□□ -0.74
SMG1-217ENST00000569764 SMARCA2P51531 1590 aa10.42□□□□□ -0.74
SMG1-217ENST00000569764 NPM2Q86SE8 214 aaKnown RBP10.41□□□□□ -0.74
SMG1-217ENST00000569764 BICRAQ9NZM4 1560 aa10.41□□□□□ -0.74
SMG1-217ENST00000569764 BAZ1BQ9UIG0 1483 aaKnown RBP10.4□□□□□ -0.74
SMG1-217ENST00000569764 WIZO95785 1651 aa10.4□□□□□ -0.75
SMG1-217ENST00000569764 HAP1P54257 671 aaPredicted RBP10.39□□□□□ -0.75
SMG1-217ENST00000569764 FBLN2P98095 1184 aa10.39□□□□□ -0.75
SMG1-217ENST00000569764 DNAJC5BQ9UF47 199 aa10.37□□□□□ -0.75
SMG1-217ENST00000569764 GTF3C3Q9Y5Q9 886 aa10.36□□□□□ -0.75
SMG1-217ENST00000569764 OSCARQ8IYS5 282 aa10.32□□□□□ -0.76
SMG1-217ENST00000569764 BAZ1AQ9NRL2 1556 aaPredicted RBP10.31□□□□□ -0.76
SMG1-217ENST00000569764 EIF4G1Q04637 1599 aaKnown RBP10.3□□□□□ -0.76
SMG1-217ENST00000569764 PHF23Q9BUL5 403 aaPredicted RBP10.3□□□□□ -0.76
SMG1-217ENST00000569764 TRIM41Q8WV44 630 aa10.29□□□□□ -0.76
SMG1-217ENST00000569764 TRHP20396 242 aaPredicted RBP10.29□□□□□ -0.76
SMG1-217ENST00000569764 SMARCA4P51532 1647 aa10.27□□□□□ -0.77
SMG1-217ENST00000569764 CHMP7Q8WUX9 453 aaPredicted RBP10.26□□□□□ -0.77
SMG1-217ENST00000569764 CC2D2AQ9P2K1 1620 aa10.24□□□□□ -0.77
SMG1-217ENST00000569764 CUX2O14529 1486 aa10.24□□□□□ -0.77
SMG1-217ENST00000569764 NCAPD3P42695 1498 aa10.23□□□□□ -0.77
SMG1-217ENST00000569764 DNAJC5Q9H3Z4 198 aa10.2□□□□□ -0.78
SMG1-217ENST00000569764 PLCB2Q00722 1185 aa10.18□□□□□ -0.78
SMG1-217ENST00000569764 SLC4A1APQ9BWU0 796 aaKnown RBP10.18□□□□□ -0.78
SMG1-217ENST00000569764 ABCC8Q09428 1581 aa10.18□□□□□ -0.78
SMG1-217ENST00000569764 CADPSQ9ULU8 1353 aa10.18□□□□□ -0.78
SMG1-217ENST00000569764 LOC105371045A0A1W2PR82 267 aa10.16□□□□□ -0.78
SMG1-217ENST00000569764 TOP2AP11388 1531 aaKnown RBP10.13□□□□□ -0.79
SMG1-217ENST00000569764 ATAD2BQ9ULI0 1458 aa10.13□□□□□ -0.79
SMG1-217ENST00000569764 CCDC88BA6NC98 1476 aa10.13□□□□□ -0.79
SMG1-217ENST00000569764 CEP164Q9UPV0 1460 aa10.12□□□□□ -0.79
SMG1-217ENST00000569764 TRIM26Q12899 539 aaPredicted RBP10.12□□□□□ -0.79
SMG1-217ENST00000569764 PDIA4P13667 645 aaKnown RBP10.1□□□□□ -0.79
SMG1-217ENST00000569764 MYT1LQ9UL68 1186 aa10.09□□□□□ -0.79
SMG1-217ENST00000569764 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.07□□□□□ -0.8
SMG1-217ENST00000569764 HNRNPUL2Q1KMD3 747 aaKnown RBP10.07□□□□□ -0.8
SMG1-217ENST00000569764 PEG3Q9GZU2 1588 aa10.07□□□□□ -0.8
SMG1-217ENST00000569764 HMGXB3Q12766 1538 aa10.06□□□□□ -0.8
SMG1-217ENST00000569764 TMEM132AQ24JP5 1023 aa10.04□□□□□ -0.8
SMG1-217ENST00000569764 ESF1Q9H501 851 aaKnown RBP10.04□□□□□ -0.8
SMG1-217ENST00000569764 MRC2Q9UBG0 1479 aa10.03□□□□□ -0.8
SMG1-217ENST00000569764 LAMC3Q9Y6N6 1575 aa10.01□□□□□ -0.81
SMG1-217ENST00000569764 UBTFP17480 764 aaKnown RBP10□□□□□ -0.81
SMG1-217ENST00000569764 DHX37Q8IY37 1157 aaKnown RBP9.99□□□□□ -0.81
SMG1-217ENST00000569764 CHMP4AQ9BY43 222 aa9.99□□□□□ -0.81
SMG1-217ENST00000569764 CDK11AQ9UQ88 783 aaPredicted RBP9.97□□□□□ -0.81
SMG1-217ENST00000569764 PDE4CQ08493 712 aa9.97□□□□□ -0.81
SMG1-217ENST00000569764 CYB5RLQ6IPT4 315 aa9.96□□□□□ -0.82
SMG1-217ENST00000569764 FANCD2Q9BXW9 1451 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms