RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 AEBP2Q6ZN18 517 aaPredicted RBP18.66■□□□□ 0.58
TDP1-213ENST00000555880 CHIC1Q5VXU3 224 aa17.74■□□□□ 0.43
TDP1-213ENST00000555880 SENP3Q9H4L4 574 aaPredicted RBP15.84■□□□□ 0.13
TDP1-213ENST00000555880 PHF23Q9BUL5 403 aaPredicted RBP15.67■□□□□ 0.1
TDP1-213ENST00000555880 FOXD1Q16676 465 aa14.79□□□□□ -0.04
TDP1-213ENST00000555880 NISCHQ9Y2I1 1504 aa14.45□□□□□ -0.1
TDP1-213ENST00000555880 PLPPR3Q6T4P5 718 aa14.2□□□□□ -0.14
TDP1-213ENST00000555880 PPP6R1Q9UPN7 881 aa13.92□□□□□ -0.18
TDP1-213ENST00000555880 ADRA2BP18089 450 aa13.87□□□□□ -0.19
TDP1-213ENST00000555880 PIAS4Q8N2W9 510 aaPredicted RBP13.84□□□□□ -0.19
TDP1-213ENST00000555880 MSH5O43196 834 aa13.76□□□□□ -0.21
TDP1-213ENST00000555880 POTEDQ86YR6 584 aa13.35□□□□□ -0.27
TDP1-213ENST00000555880 MAPK8IP2Q13387 824 aaPredicted RBP12.72□□□□□ -0.37
TDP1-213ENST00000555880 SCAF1Q9H7N4 1312 aaKnown RBP12.6□□□□□ -0.39
TDP1-213ENST00000555880 DMRT2Q9Y5R5 561 aa12.58□□□□□ -0.4
TDP1-213ENST00000555880 PPP4R3CPQ6ZMV5 832 aa12.47□□□□□ -0.41
TDP1-213ENST00000555880 CCDC180Q9P1Z9 1646 aa12.38□□□□□ -0.43
TDP1-213ENST00000555880 SHROOM4Q9ULL8 1493 aa12.24□□□□□ -0.45
TDP1-213ENST00000555880 ZCCHC6Q5VYS8 1495 aaKnown RBP12.23□□□□□ -0.45
TDP1-213ENST00000555880 CNKSR2Q8WXI2 1034 aa12.2□□□□□ -0.46
TDP1-213ENST00000555880 HOXD11P31277 338 aaPredicted RBP12.14□□□□□ -0.47
TDP1-213ENST00000555880 DCAF8L1A6NGE4 600 aa12.1□□□□□ -0.47
TDP1-213ENST00000555880 RNF216Q9NWF9 866 aaPredicted RBP12.06□□□□□ -0.48
TDP1-213ENST00000555880 SUPT5HO00267 1087 aaKnown RBP12.02□□□□□ -0.48
TDP1-213ENST00000555880 NCBP3Q53F19 620 aaKnown RBP11.97□□□□□ -0.49
TDP1-213ENST00000555880 DCAF8L2P0C7V8 631 aa11.95□□□□□ -0.5
TDP1-213ENST00000555880 DCAF1Q9Y4B6 1507 aa11.91□□□□□ -0.5
TDP1-213ENST00000555880 NPM3O75607 178 aaKnown RBP11.87□□□□□ -0.51
TDP1-213ENST00000555880 CACNB1Q02641 598 aaPredicted RBP11.78□□□□□ -0.52
TDP1-213ENST00000555880 RNF39Q9H2S5 420 aa11.78□□□□□ -0.52
TDP1-213ENST00000555880 KCNA4P22459 653 aa11.74□□□□□ -0.53
TDP1-213ENST00000555880 ABCC9O60706 1549 aa11.67□□□□□ -0.54
TDP1-213ENST00000555880 DNAJC5BQ9UF47 199 aa11.64□□□□□ -0.55
TDP1-213ENST00000555880 MYO15BQ96JP2 1530 aa11.63□□□□□ -0.55
TDP1-213ENST00000555880 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.58□□□□□ -0.56
TDP1-213ENST00000555880 C1QBPQ07021 282 aaKnown RBP11.57□□□□□ -0.56
TDP1-213ENST00000555880 NACADO15069 1562 aa11.52□□□□□ -0.57
TDP1-213ENST00000555880 SCRIBQ14160 1630 aa11.51□□□□□ -0.57
TDP1-213ENST00000555880 RB1CC1Q8TDY2 1594 aa11.41□□□□□ -0.58
TDP1-213ENST00000555880 RSF1Q96T23 1441 aaPredicted RBP11.4□□□□□ -0.58
TDP1-213ENST00000555880 HRCP23327 699 aa11.39□□□□□ -0.59
TDP1-213ENST00000555880 U3KPZ7 1027 aaPredicted RBP11.38□□□□□ -0.59
TDP1-213ENST00000555880 PCGF6Q9BYE7 350 aa11.35□□□□□ -0.59
TDP1-213ENST00000555880 SLC4A2P04920 1241 aa11.32□□□□□ -0.6
TDP1-213ENST00000555880 LOC105371045A0A1W2PR82 267 aa11.3□□□□□ -0.6
TDP1-213ENST00000555880 TRIM41Q8WV44 630 aa11.25□□□□□ -0.61
TDP1-213ENST00000555880 SPINK5Q9NQ38 1064 aaPredicted RBP11.21□□□□□ -0.62
TDP1-213ENST00000555880 CECR2Q9BXF3 1484 aa11.2□□□□□ -0.62
TDP1-213ENST00000555880 MROH2BQ7Z745 1585 aa11.2□□□□□ -0.62
TDP1-213ENST00000555880 TRIM26Q12899 539 aaPredicted RBP11.19□□□□□ -0.62
TDP1-213ENST00000555880 WIZO95785 1651 aa11.16□□□□□ -0.62
TDP1-213ENST00000555880 CAPN15O75808 1086 aa11.15□□□□□ -0.62
TDP1-213ENST00000555880 BAZ1AQ9NRL2 1556 aaPredicted RBP11.15□□□□□ -0.62
TDP1-213ENST00000555880 FAM9AQ8IZU1 332 aaPredicted RBP11.09□□□□□ -0.63
TDP1-213ENST00000555880 PABPN1Q86U42 306 aaKnown RBP eCLIP11.08□□□□□ -0.64
TDP1-213ENST00000555880 DSG3P32926 999 aa11.06□□□□□ -0.64
TDP1-213ENST00000555880 SLC4A1APQ9BWU0 796 aaKnown RBP11.06□□□□□ -0.64
TDP1-213ENST00000555880 PPARGC1BQ86YN6 1023 aaKnown RBP11.05□□□□□ -0.64
TDP1-213ENST00000555880 TOP2AP11388 1531 aaKnown RBP11.03□□□□□ -0.64
TDP1-213ENST00000555880 SMARCA4P51532 1647 aa11.03□□□□□ -0.64
TDP1-213ENST00000555880 UNC13AQ9UPW8 1703 aa11.03□□□□□ -0.64
TDP1-213ENST00000555880 EIF4G1Q04637 1599 aaKnown RBP11.03□□□□□ -0.64
TDP1-213ENST00000555880 ZEB1P37275 1124 aaPredicted RBP11.02□□□□□ -0.65
TDP1-213ENST00000555880 TRHP20396 242 aaPredicted RBP11.01□□□□□ -0.65
TDP1-213ENST00000555880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11□□□□□ -0.65
TDP1-213ENST00000555880 HNRNPUL2Q1KMD3 747 aaKnown RBP11□□□□□ -0.65
TDP1-213ENST00000555880 BICRAQ9NZM4 1560 aa10.98□□□□□ -0.65
TDP1-213ENST00000555880 APLP2Q06481 763 aa10.96□□□□□ -0.65
TDP1-213ENST00000555880 SAMD1Q6SPF0 538 aaPredicted RBP10.96□□□□□ -0.65
TDP1-213ENST00000555880 EHMT2Q96KQ7 1210 aa10.95□□□□□ -0.66
TDP1-213ENST00000555880 SMARCA2P51531 1590 aa10.94□□□□□ -0.66
TDP1-213ENST00000555880 ABCB7O75027 752 aa10.94□□□□□ -0.66
TDP1-213ENST00000555880 MYCNP04198 464 aaPredicted RBP10.94□□□□□ -0.66
TDP1-213ENST00000555880 ZNF219Q9P2Y4 722 aaPredicted RBP10.94□□□□□ -0.66
TDP1-213ENST00000555880 CCDC88BA6NC98 1476 aa10.93□□□□□ -0.66
TDP1-213ENST00000555880 ABCC8Q09428 1581 aa10.89□□□□□ -0.67
TDP1-213ENST00000555880 FOXD4L1Q9NU39 408 aa10.88□□□□□ -0.67
TDP1-213ENST00000555880 EEA1Q15075 1411 aa10.84□□□□□ -0.67
TDP1-213ENST00000555880 PEG3Q9GZU2 1588 aa10.83□□□□□ -0.68
TDP1-213ENST00000555880 ZBTB22O15209 634 aa10.81□□□□□ -0.68
TDP1-213ENST00000555880 WRNQ14191 1432 aaPredicted RBP eCLIP10.79□□□□□ -0.68
TDP1-213ENST00000555880 CEP162Q5TB80 1403 aa10.78□□□□□ -0.68
TDP1-213ENST00000555880 TNIKQ9UKE5 1360 aa10.77□□□□□ -0.69
TDP1-213ENST00000555880 SOGA1O94964 1423 aa10.77□□□□□ -0.69
TDP1-213ENST00000555880 ATAD2BQ9ULI0 1458 aa10.76□□□□□ -0.69
TDP1-213ENST00000555880 CSRNP3Q8WYN3 585 aa10.74□□□□□ -0.69
TDP1-213ENST00000555880 ATF5Q9Y2D1 282 aaPredicted RBP10.74□□□□□ -0.69
TDP1-213ENST00000555880 GOLGA3Q08378 1498 aa10.74□□□□□ -0.69
TDP1-213ENST00000555880 BAZ1BQ9UIG0 1483 aaKnown RBP10.74□□□□□ -0.69
TDP1-213ENST00000555880 UBTFP17480 764 aaKnown RBP10.72□□□□□ -0.69
TDP1-213ENST00000555880 POLA2Q14181 598 aa10.72□□□□□ -0.69
TDP1-213ENST00000555880 CCER1Q8TC90 406 aaPredicted RBP10.72□□□□□ -0.69
TDP1-213ENST00000555880 RUSC2Q8N2Y8 1516 aa10.69□□□□□ -0.7
TDP1-213ENST00000555880 KIF21BO75037 1637 aa10.68□□□□□ -0.7
TDP1-213ENST00000555880 CEP164Q9UPV0 1460 aa10.68□□□□□ -0.7
TDP1-213ENST00000555880 SYNJ1O43426 1573 aa10.68□□□□□ -0.7
TDP1-213ENST00000555880 NCAPD3P42695 1498 aa10.65□□□□□ -0.7
TDP1-213ENST00000555880 TTBK1Q5TCY1 1321 aaPredicted RBP10.63□□□□□ -0.71
TDP1-213ENST00000555880 HMGXB3Q12766 1538 aa10.61□□□□□ -0.71
TDP1-213ENST00000555880 CLIP1P30622 1438 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms