RNA–Protein interactions for RNA: ENST00000553602.1

TMEM55B-204, humanhuman

TSL 2

Gene TMEM55B, Length 382 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM55B-204ENST00000553602 CHIC1Q5VXU3 224 aa12.83□□□□□ -0.36
TMEM55B-204ENST00000553602 AEBP2Q6ZN18 517 aaPredicted RBP12.74□□□□□ -0.37
TMEM55B-204ENST00000553602 PHF23Q9BUL5 403 aaPredicted RBP11.28□□□□□ -0.6
TMEM55B-204ENST00000553602 NISCHQ9Y2I1 1504 aa10.87□□□□□ -0.67
TMEM55B-204ENST00000553602 SENP3Q9H4L4 574 aaPredicted RBP10.83□□□□□ -0.68
TMEM55B-204ENST00000553602 PLPPR3Q6T4P5 718 aa10.6□□□□□ -0.71
TMEM55B-204ENST00000553602 FOXD1Q16676 465 aa10.06□□□□□ -0.8
TMEM55B-204ENST00000553602 ADRA2BP18089 450 aa9.86□□□□□ -0.83
TMEM55B-204ENST00000553602 PPP6R1Q9UPN7 881 aa9.83□□□□□ -0.84
TMEM55B-204ENST00000553602 KCNA4P22459 653 aa9.53□□□□□ -0.88
TMEM55B-204ENST00000553602 PIAS4Q8N2W9 510 aaPredicted RBP9.5□□□□□ -0.89
TMEM55B-204ENST00000553602 MSH5O43196 834 aa9.46□□□□□ -0.9
TMEM55B-204ENST00000553602 CCDC180Q9P1Z9 1646 aa9.36□□□□□ -0.91
TMEM55B-204ENST00000553602 PPP4R3CPQ6ZMV5 832 aa9.36□□□□□ -0.91
TMEM55B-204ENST00000553602 EHMT2Q96KQ7 1210 aa9.3□□□□□ -0.92
TMEM55B-204ENST00000553602 NCBP3Q53F19 620 aaKnown RBP9.26□□□□□ -0.93
TMEM55B-204ENST00000553602 ZCCHC6Q5VYS8 1495 aaKnown RBP9.26□□□□□ -0.93
TMEM55B-204ENST00000553602 POTEDQ86YR6 584 aa9.2□□□□□ -0.94
TMEM55B-204ENST00000553602 SLC4A1APQ9BWU0 796 aaKnown RBP9.17□□□□□ -0.94
TMEM55B-204ENST00000553602 DCAF1Q9Y4B6 1507 aa9.09□□□□□ -0.95
TMEM55B-204ENST00000553602 SCAF1Q9H7N4 1312 aaKnown RBP9.08□□□□□ -0.96
TMEM55B-204ENST00000553602 NPM3O75607 178 aaKnown RBP9.08□□□□□ -0.96
TMEM55B-204ENST00000553602 CNKSR2Q8WXI2 1034 aa9.04□□□□□ -0.96
TMEM55B-204ENST00000553602 CSRNP3Q8WYN3 585 aa9.01□□□□□ -0.97
TMEM55B-204ENST00000553602 SHROOM4Q9ULL8 1493 aa8.97□□□□□ -0.97
TMEM55B-204ENST00000553602 MYO15BQ96JP2 1530 aa8.85□□□□□ -0.99
TMEM55B-204ENST00000553602 SUPT5HO00267 1087 aaKnown RBP8.83□□□□□ -1
TMEM55B-204ENST00000553602 MAPK8IP2Q13387 824 aaPredicted RBP8.82□□□□□ -1
TMEM55B-204ENST00000553602 DNAJC5BQ9UF47 199 aa8.79□□□□□ -1
TMEM55B-204ENST00000553602 ABCC9O60706 1549 aa8.78□□□□□ -1
TMEM55B-204ENST00000553602 RNF216Q9NWF9 866 aaPredicted RBP8.77□□□□□ -1.01
TMEM55B-204ENST00000553602 ZBTB22O15209 634 aa8.76□□□□□ -1.01
TMEM55B-204ENST00000553602 FOXD4L1Q9NU39 408 aa8.7□□□□□ -1.02
TMEM55B-204ENST00000553602 HRCP23327 699 aa8.68□□□□□ -1.02
TMEM55B-204ENST00000553602 DMRT2Q9Y5R5 561 aa8.67□□□□□ -1.02
TMEM55B-204ENST00000553602 HOXD11P31277 338 aaPredicted RBP8.63□□□□□ -1.03
TMEM55B-204ENST00000553602 RB1CC1Q8TDY2 1594 aa8.58□□□□□ -1.04
TMEM55B-204ENST00000553602 NACADO15069 1562 aa8.57□□□□□ -1.04
TMEM55B-204ENST00000553602 RSF1Q96T23 1441 aaPredicted RBP8.57□□□□□ -1.04
TMEM55B-204ENST00000553602 DCAF8L2P0C7V8 631 aa8.55□□□□□ -1.04
TMEM55B-204ENST00000553602 SCRIBQ14160 1630 aa8.53□□□□□ -1.04
TMEM55B-204ENST00000553602 SLC4A2P04920 1241 aa8.47□□□□□ -1.05
TMEM55B-204ENST00000553602 PCGF6Q9BYE7 350 aa8.45□□□□□ -1.06
TMEM55B-204ENST00000553602 TRIM26Q12899 539 aaPredicted RBP8.44□□□□□ -1.06
TMEM55B-204ENST00000553602 BAZ1AQ9NRL2 1556 aaPredicted RBP8.43□□□□□ -1.06
TMEM55B-204ENST00000553602 EIF4G1Q04637 1599 aaKnown RBP8.42□□□□□ -1.06
TMEM55B-204ENST00000553602 MYCNP04198 464 aaPredicted RBP8.41□□□□□ -1.06
TMEM55B-204ENST00000553602 ZEB1P37275 1124 aaPredicted RBP8.39□□□□□ -1.07
TMEM55B-204ENST00000553602 ATXN8OSP0DMR3 200 aa8.38□□□□□ -1.07
TMEM55B-204ENST00000553602 MROH2BQ7Z745 1585 aa8.38□□□□□ -1.07
TMEM55B-204ENST00000553602 LOC105371045A0A1W2PR82 267 aa8.35□□□□□ -1.07
TMEM55B-204ENST00000553602 CECR2Q9BXF3 1484 aa8.34□□□□□ -1.07
TMEM55B-204ENST00000553602 TRIM41Q8WV44 630 aa8.33□□□□□ -1.08
TMEM55B-204ENST00000553602 TOP2AP11388 1531 aaKnown RBP8.32□□□□□ -1.08
TMEM55B-204ENST00000553602 WIZO95785 1651 aa8.31□□□□□ -1.08
TMEM55B-204ENST00000553602 DCAF8L1A6NGE4 600 aa8.28□□□□□ -1.08
TMEM55B-204ENST00000553602 SMARCA4P51532 1647 aa8.27□□□□□ -1.09
TMEM55B-204ENST00000553602 PPARGC1BQ86YN6 1023 aaKnown RBP8.26□□□□□ -1.09
TMEM55B-204ENST00000553602 WRNQ14191 1432 aaPredicted RBP eCLIP8.26□□□□□ -1.09
TMEM55B-204ENST00000553602 EEA1Q15075 1411 aa8.25□□□□□ -1.09
TMEM55B-204ENST00000553602 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.24□□□□□ -1.09
TMEM55B-204ENST00000553602 SMARCA2P51531 1590 aa8.22□□□□□ -1.09
TMEM55B-204ENST00000553602 PEG3Q9GZU2 1588 aa8.22□□□□□ -1.09
TMEM55B-204ENST00000553602 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.2□□□□□ -1.1
TMEM55B-204ENST00000553602 HNRNPUL2Q1KMD3 747 aaKnown RBP8.2□□□□□ -1.1
TMEM55B-204ENST00000553602 UNC13AQ9UPW8 1703 aa8.18□□□□□ -1.1
TMEM55B-204ENST00000553602 SAMD1Q6SPF0 538 aaPredicted RBP8.18□□□□□ -1.1
TMEM55B-204ENST00000553602 CCDC88BA6NC98 1476 aa8.17□□□□□ -1.1
TMEM55B-204ENST00000553602 TNIKQ9UKE5 1360 aa8.15□□□□□ -1.1
TMEM55B-204ENST00000553602 FKBP8Q14318 412 aa8.15□□□□□ -1.1
TMEM55B-204ENST00000553602 KIF21BO75037 1637 aa8.12□□□□□ -1.11
TMEM55B-204ENST00000553602 CACNB1Q02641 598 aaPredicted RBP8.12□□□□□ -1.11
TMEM55B-204ENST00000553602 PELP1Q8IZL8 1130 aaKnown RBP8.12□□□□□ -1.11
TMEM55B-204ENST00000553602 U3KPZ7 1027 aaPredicted RBP8.12□□□□□ -1.11
TMEM55B-204ENST00000553602 CEP162Q5TB80 1403 aa8.12□□□□□ -1.11
TMEM55B-204ENST00000553602 ABCC8Q09428 1581 aa8.1□□□□□ -1.11
TMEM55B-204ENST00000553602 BICRAQ9NZM4 1560 aa8.1□□□□□ -1.11
TMEM55B-204ENST00000553602 ATF5Q9Y2D1 282 aaPredicted RBP8.1□□□□□ -1.11
TMEM55B-204ENST00000553602 GOLGA3Q08378 1498 aa8.1□□□□□ -1.11
TMEM55B-204ENST00000553602 AMER1Q5JTC6 1135 aaPredicted RBP8.09□□□□□ -1.11
TMEM55B-204ENST00000553602 FAM9AQ8IZU1 332 aaPredicted RBP8.09□□□□□ -1.11
TMEM55B-204ENST00000553602 BAZ1BQ9UIG0 1483 aaKnown RBP8.07□□□□□ -1.12
TMEM55B-204ENST00000553602 CEP164Q9UPV0 1460 aa8.06□□□□□ -1.12
TMEM55B-204ENST00000553602 APLP2Q06481 763 aa8.05□□□□□ -1.12
TMEM55B-204ENST00000553602 RNF39Q9H2S5 420 aa8.04□□□□□ -1.12
TMEM55B-204ENST00000553602 SOGA1O94964 1423 aa8.03□□□□□ -1.12
TMEM55B-204ENST00000553602 RTN4Q9NQC3 1192 aaKnown RBP8.03□□□□□ -1.12
TMEM55B-204ENST00000553602 SYNJ1O43426 1573 aa8.01□□□□□ -1.13
TMEM55B-204ENST00000553602 ATAD2BQ9ULI0 1458 aa8□□□□□ -1.13
TMEM55B-204ENST00000553602 BIVM-ERCC5R4GMW8 1640 aa8□□□□□ -1.13
TMEM55B-204ENST00000553602 TOP2BQ02880 1626 aa7.99□□□□□ -1.13
TMEM55B-204ENST00000553602 ERICH3Q5RHP9 1530 aa7.98□□□□□ -1.13
TMEM55B-204ENST00000553602 VPS8Q8N3P4 1428 aa7.98□□□□□ -1.13
TMEM55B-204ENST00000553602 CCER1Q8TC90 406 aaPredicted RBP7.97□□□□□ -1.13
TMEM55B-204ENST00000553602 ZNF219Q9P2Y4 722 aaPredicted RBP7.97□□□□□ -1.13
TMEM55B-204ENST00000553602 HMGXB3Q12766 1538 aa7.97□□□□□ -1.13
TMEM55B-204ENST00000553602 RUSC2Q8N2Y8 1516 aa7.96□□□□□ -1.14
TMEM55B-204ENST00000553602 C1QBPQ07021 282 aaKnown RBP7.95□□□□□ -1.14
TMEM55B-204ENST00000553602 CLIP1P30622 1438 aa7.95□□□□□ -1.14
TMEM55B-204ENST00000553602 CLSPNQ9HAW4 1339 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms