RNA–Protein interactions for RNA: ENST00000506707.1

USP46-206, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2

Gene USP46, Length 536 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-206ENST00000506707 AEBP2Q6ZN18 517 aaPredicted RBP17.72■□□□□ 0.43
USP46-206ENST00000506707 CHIC1Q5VXU3 224 aa16.65■□□□□ 0.26
USP46-206ENST00000506707 SENP3Q9H4L4 574 aaPredicted RBP15.26■□□□□ 0.03
USP46-206ENST00000506707 PHF23Q9BUL5 403 aaPredicted RBP14.94□□□□□ -0.02
USP46-206ENST00000506707 FOXD1Q16676 465 aa14.21□□□□□ -0.13
USP46-206ENST00000506707 POTEDQ86YR6 584 aa13.81□□□□□ -0.2
USP46-206ENST00000506707 NISCHQ9Y2I1 1504 aa13.68□□□□□ -0.22
USP46-206ENST00000506707 MSH5O43196 834 aa13.53□□□□□ -0.24
USP46-206ENST00000506707 PIAS4Q8N2W9 510 aaPredicted RBP13.23□□□□□ -0.29
USP46-206ENST00000506707 PLPPR3Q6T4P5 718 aa13.04□□□□□ -0.32
USP46-206ENST00000506707 PPP6R1Q9UPN7 881 aa12.94□□□□□ -0.34
USP46-206ENST00000506707 ADRA2BP18089 450 aa12.89□□□□□ -0.35
USP46-206ENST00000506707 DMRT2Q9Y5R5 561 aa12.03□□□□□ -0.48
USP46-206ENST00000506707 CCDC180Q9P1Z9 1646 aa12.02□□□□□ -0.49
USP46-206ENST00000506707 MAPK8IP2Q13387 824 aaPredicted RBP11.93□□□□□ -0.5
USP46-206ENST00000506707 SCAF1Q9H7N4 1312 aaKnown RBP11.88□□□□□ -0.51
USP46-206ENST00000506707 CACNB1Q02641 598 aaPredicted RBP11.81□□□□□ -0.52
USP46-206ENST00000506707 ABCC9O60706 1549 aa11.77□□□□□ -0.52
USP46-206ENST00000506707 DCAF8L1A6NGE4 600 aa11.53□□□□□ -0.56
USP46-206ENST00000506707 DCAF8L2P0C7V8 631 aa11.46□□□□□ -0.57
USP46-206ENST00000506707 RNF39Q9H2S5 420 aa11.46□□□□□ -0.57
USP46-206ENST00000506707 HOXD11P31277 338 aaPredicted RBP11.43□□□□□ -0.58
USP46-206ENST00000506707 ZCCHC6Q5VYS8 1495 aaKnown RBP11.39□□□□□ -0.59
USP46-206ENST00000506707 NACADO15069 1562 aa11.34□□□□□ -0.59
USP46-206ENST00000506707 PPP4R3CPQ6ZMV5 832 aa11.34□□□□□ -0.59
USP46-206ENST00000506707 MYO15BQ96JP2 1530 aa11.32□□□□□ -0.6
USP46-206ENST00000506707 RB1CC1Q8TDY2 1594 aa11.31□□□□□ -0.6
USP46-206ENST00000506707 DCAF1Q9Y4B6 1507 aa11.3□□□□□ -0.6
USP46-206ENST00000506707 C1QBPQ07021 282 aaKnown RBP11.3□□□□□ -0.6
USP46-206ENST00000506707 CNKSR2Q8WXI2 1034 aa11.25□□□□□ -0.61
USP46-206ENST00000506707 RNF216Q9NWF9 866 aaPredicted RBP11.25□□□□□ -0.61
USP46-206ENST00000506707 DNAJC5BQ9UF47 199 aa11.16□□□□□ -0.62
USP46-206ENST00000506707 PABPN1Q86U42 306 aaKnown RBP eCLIP11.08□□□□□ -0.64
USP46-206ENST00000506707 BICRAQ9NZM4 1560 aa11.01□□□□□ -0.65
USP46-206ENST00000506707 SCRIBQ14160 1630 aa11.01□□□□□ -0.65
USP46-206ENST00000506707 UNC13AQ9UPW8 1703 aa11□□□□□ -0.65
USP46-206ENST00000506707 SHROOM4Q9ULL8 1493 aa10.88□□□□□ -0.67
USP46-206ENST00000506707 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP46-206ENST00000506707 NCBP3Q53F19 620 aaKnown RBP10.83□□□□□ -0.68
USP46-206ENST00000506707 POTEHQ6S545 545 aa10.76□□□□□ -0.69
USP46-206ENST00000506707 EIF4G1Q04637 1599 aaKnown RBP10.69□□□□□ -0.7
USP46-206ENST00000506707 CECR2Q9BXF3 1484 aa10.68□□□□□ -0.7
USP46-206ENST00000506707 NPM3O75607 178 aaKnown RBP10.63□□□□□ -0.71
USP46-206ENST00000506707 CC2D2AQ9P2K1 1620 aa10.62□□□□□ -0.71
USP46-206ENST00000506707 U3KPZ7 1027 aaPredicted RBP10.6□□□□□ -0.71
USP46-206ENST00000506707 DSG3P32926 999 aa10.59□□□□□ -0.71
USP46-206ENST00000506707 CAPN15O75808 1086 aa10.57□□□□□ -0.72
USP46-206ENST00000506707 BAZ1AQ9NRL2 1556 aaPredicted RBP10.56□□□□□ -0.72
USP46-206ENST00000506707 SMARCA4P51532 1647 aa10.55□□□□□ -0.72
USP46-206ENST00000506707 MROH2BQ7Z745 1585 aa10.55□□□□□ -0.72
USP46-206ENST00000506707 SPINK5Q9NQ38 1064 aaPredicted RBP10.53□□□□□ -0.72
USP46-206ENST00000506707 ATAD2BQ9ULI0 1458 aa10.53□□□□□ -0.72
USP46-206ENST00000506707 NCAPD3P42695 1498 aa10.52□□□□□ -0.73
USP46-206ENST00000506707 RSF1Q96T23 1441 aaPredicted RBP10.5□□□□□ -0.73
USP46-206ENST00000506707 SMARCA2P51531 1590 aa10.47□□□□□ -0.73
USP46-206ENST00000506707 PEG3Q9GZU2 1588 aa10.46□□□□□ -0.74
USP46-206ENST00000506707 HMGXB3Q12766 1538 aa10.41□□□□□ -0.74
USP46-206ENST00000506707 BAZ1BQ9UIG0 1483 aaKnown RBP10.41□□□□□ -0.74
USP46-206ENST00000506707 WIZO95785 1651 aa10.4□□□□□ -0.74
USP46-206ENST00000506707 APLP2Q06481 763 aa10.36□□□□□ -0.75
USP46-206ENST00000506707 ZNF219Q9P2Y4 722 aaPredicted RBP10.32□□□□□ -0.76
USP46-206ENST00000506707 SUPT5HO00267 1087 aaKnown RBP10.31□□□□□ -0.76
USP46-206ENST00000506707 TRHP20396 242 aaPredicted RBP10.3□□□□□ -0.76
USP46-206ENST00000506707 TOP2AP11388 1531 aaKnown RBP10.29□□□□□ -0.76
USP46-206ENST00000506707 ABCB7O75027 752 aa10.28□□□□□ -0.76
USP46-206ENST00000506707 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.23□□□□□ -0.77
USP46-206ENST00000506707 SLC4A2P04920 1241 aa10.23□□□□□ -0.77
USP46-206ENST00000506707 HNRNPUL2Q1KMD3 747 aaKnown RBP10.23□□□□□ -0.77
USP46-206ENST00000506707 CADPSQ9ULU8 1353 aa10.23□□□□□ -0.77
USP46-206ENST00000506707 CCDC88BA6NC98 1476 aa10.23□□□□□ -0.77
USP46-206ENST00000506707 NESP48681 1621 aa10.22□□□□□ -0.77
USP46-206ENST00000506707 RBM42Q9BTD8 480 aaKnown RBP10.19□□□□□ -0.78
USP46-206ENST00000506707 CFTRP13569 1480 aa10.17□□□□□ -0.78
USP46-206ENST00000506707 LAMC3Q9Y6N6 1575 aa10.16□□□□□ -0.78
USP46-206ENST00000506707 PDS5BQ9NTI5 1447 aa10.14□□□□□ -0.79
USP46-206ENST00000506707 SAMD1Q6SPF0 538 aaPredicted RBP10.13□□□□□ -0.79
USP46-206ENST00000506707 ERCC6Q03468 1493 aa10.11□□□□□ -0.79
USP46-206ENST00000506707 FANCD2Q9BXW9 1451 aa10.07□□□□□ -0.8
USP46-206ENST00000506707 CHRDL2Q6WN34 429 aa10.06□□□□□ -0.8
USP46-206ENST00000506707 KCNA4P22459 653 aa10.05□□□□□ -0.8
USP46-206ENST00000506707 CEP164Q9UPV0 1460 aa10.03□□□□□ -0.8
USP46-206ENST00000506707 KIF21AQ7Z4S6 1674 aa10.01□□□□□ -0.81
USP46-206ENST00000506707 MRC2Q9UBG0 1479 aa10□□□□□ -0.81
USP46-206ENST00000506707 CUX2O14529 1486 aa9.98□□□□□ -0.81
USP46-206ENST00000506707 THOC2Q8NI27 1593 aaKnown RBP9.98□□□□□ -0.81
USP46-206ENST00000506707 URB2Q14146 1524 aaKnown RBP9.97□□□□□ -0.81
USP46-206ENST00000506707 WDR62O43379 1518 aa9.96□□□□□ -0.82
USP46-206ENST00000506707 PRDM2Q13029 1718 aa9.93□□□□□ -0.82
USP46-206ENST00000506707 POLA2Q14181 598 aa9.92□□□□□ -0.82
USP46-206ENST00000506707 TOPBP1Q92547 1522 aa9.92□□□□□ -0.82
USP46-206ENST00000506707 SP7Q8TDD2 431 aaPredicted RBP9.91□□□□□ -0.82
USP46-206ENST00000506707 ABCC8Q09428 1581 aa9.91□□□□□ -0.82
USP46-206ENST00000506707 MYCNP04198 464 aaPredicted RBP9.9□□□□□ -0.82
USP46-206ENST00000506707 DNMBPQ6XZF7 1577 aa9.88□□□□□ -0.83
USP46-206ENST00000506707 CUX1P39880 1505 aa9.87□□□□□ -0.83
USP46-206ENST00000506707 WRNQ14191 1432 aaPredicted RBP eCLIP9.86□□□□□ -0.83
USP46-206ENST00000506707 POLA1P09884 1462 aaPredicted RBP9.85□□□□□ -0.83
USP46-206ENST00000506707 AKT1S1Q96B36 256 aa9.84□□□□□ -0.83
USP46-206ENST00000506707 SOGA1O94964 1423 aa9.83□□□□□ -0.84
USP46-206ENST00000506707 IFT140Q96RY7 1462 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms