Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
PRKNO60260 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.07■□□□□ 0.32
PRKNO60260 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 AP000593.1-201ENST00000393668 712 ntBASIC17.07■□□□□ 0.32
PRKNO60260 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.07■□□□□ 0.32
PRKNO60260 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.07■□□□□ 0.32
PRKNO60260 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.07■□□□□ 0.32
PRKNO60260 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.07■□□□□ 0.32
PRKNO60260 MIR3180-4-201ENST00000582223 153 ntBASIC17.07■□□□□ 0.32
PRKNO60260 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.07■□□□□ 0.32
PRKNO60260 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 NEFHP1-201ENST00000412845 2629 ntBASIC17.07■□□□□ 0.32
PRKNO60260 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.07■□□□□ 0.32
PRKNO60260 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PRKNO60260 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKNO60260 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
PRKNO60260 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PRKNO60260 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.06■□□□□ 0.32
PRKNO60260 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.06■□□□□ 0.32
PRKNO60260 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.06■□□□□ 0.32
PRKNO60260 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.06■□□□□ 0.32
PRKNO60260 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 AC112777.1-201ENST00000540175 1423 ntBASIC17.06■□□□□ 0.32
PRKNO60260 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
PRKNO60260 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PRKNO60260 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PRKNO60260 AL138781.2-201ENST00000617896 1843 ntBASIC17.06■□□□□ 0.32
PRKNO60260 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
PRKNO60260 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.06■□□□□ 0.32
PRKNO60260 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.06■□□□□ 0.32
PRKNO60260 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
PRKNO60260 AC116407.4-201ENST00000623319 1061 ntBASIC17.06■□□□□ 0.32
PRKNO60260 AP000550.4-202ENST00000639755 178 ntBASIC17.06■□□□□ 0.32
PRKNO60260 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.06■□□□□ 0.32
PRKNO60260 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PRKNO60260 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKNO60260 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PRKNO60260 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.05■□□□□ 0.32
PRKNO60260 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 IER3-202ENST00000376377 1350 ntBASIC17.05■□□□□ 0.32
PRKNO60260 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.05■□□□□ 0.32
PRKNO60260 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.05■□□□□ 0.32
PRKNO60260 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.05■□□□□ 0.32
PRKNO60260 SDHAP2-201ENST00000455183 2001 ntBASIC17.05■□□□□ 0.32
PRKNO60260 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 PVRIG2P-201ENST00000435460 978 ntBASIC17.05■□□□□ 0.32
PRKNO60260 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.05■□□□□ 0.32
PRKNO60260 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.05■□□□□ 0.32
PRKNO60260 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.05■□□□□ 0.32
PRKNO60260 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.05■□□□□ 0.32
PRKNO60260 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
PRKNO60260 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PRKNO60260 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.05■□□□□ 0.32
PRKNO60260 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.04■□□□□ 0.32
PRKNO60260 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
PRKNO60260 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PRKNO60260 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms