Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.69■□□□□ 0.74
FOXN3O00409 AC009947.2-201ENST00000444014 672 ntBASIC19.69■□□□□ 0.74
FOXN3O00409 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.69■□□□□ 0.74
FOXN3O00409 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.69■□□□□ 0.74
FOXN3O00409 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.69■□□□□ 0.74
FOXN3O00409 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.69■□□□□ 0.74
FOXN3O00409 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
FOXN3O00409 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXN3O00409 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXN3O00409 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.69■□□□□ 0.74
FOXN3O00409 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.69■□□□□ 0.74
FOXN3O00409 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXN3O00409 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.69■□□□□ 0.74
FOXN3O00409 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.68■□□□□ 0.74
FOXN3O00409 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.68■□□□□ 0.74
FOXN3O00409 AC005332.8-201ENST00000622750 2735 ntBASIC19.68■□□□□ 0.74
FOXN3O00409 AL096828.2-201ENST00000567259 1965 ntBASIC19.68■□□□□ 0.74
FOXN3O00409 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
FOXN3O00409 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXN3O00409 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
FOXN3O00409 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
FOXN3O00409 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXN3O00409 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXN3O00409 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 AC087499.1-201ENST00000418141 1075 ntBASIC19.68■□□□□ 0.74
FOXN3O00409 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXN3O00409 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.68■□□□□ 0.74
FOXN3O00409 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.68■□□□□ 0.74
FOXN3O00409 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.68■□□□□ 0.74
FOXN3O00409 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXN3O00409 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
FOXN3O00409 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.68■□□□□ 0.74
FOXN3O00409 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.68■□□□□ 0.74
FOXN3O00409 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
FOXN3O00409 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.67■□□□□ 0.74
FOXN3O00409 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.67■□□□□ 0.74
FOXN3O00409 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 LINC01126-201ENST00000623515 1646 ntBASIC19.67■□□□□ 0.74
FOXN3O00409 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.67■□□□□ 0.74
FOXN3O00409 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.67■□□□□ 0.74
FOXN3O00409 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
FOXN3O00409 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.67■□□□□ 0.74
FOXN3O00409 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 SEC1P-202ENST00000473944 940 ntBASIC19.67■□□□□ 0.74
FOXN3O00409 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.67■□□□□ 0.74
FOXN3O00409 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.67■□□□□ 0.74
FOXN3O00409 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 AC024243.1-201ENST00000609234 778 ntBASIC19.67■□□□□ 0.74
FOXN3O00409 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
FOXN3O00409 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.67■□□□□ 0.74
FOXN3O00409 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.67■□□□□ 0.74
FOXN3O00409 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
FOXN3O00409 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.66■□□□□ 0.74
FOXN3O00409 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
FOXN3O00409 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.66■□□□□ 0.74
FOXN3O00409 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.66■□□□□ 0.74
FOXN3O00409 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
FOXN3O00409 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
FOXN3O00409 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
FOXN3O00409 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
FOXN3O00409 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
FOXN3O00409 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.66■□□□□ 0.74
FOXN3O00409 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms