Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 MKNK2P1-201ENST00000437526 628 ntBASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 C20orf181-201ENST00000623918 480 ntBASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 MIR4469-201ENST00000583919 79 ntBASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 AC012645.4-201ENST00000610691 1061 ntBASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 AC093028.1-201ENST00000622998 982 ntBASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 KRT18P2-201ENST00000447938 1258 ntBASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 AC113404.2-201ENST00000507884 177 ntBASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 AL078644.1-201ENST00000609881 752 ntBASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.53■□□□□ 0.24
COL6A6A6NMZ7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A6A6NMZ7 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL6A6A6NMZ7 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 AC108751.1-201ENST00000490852 363 ntBASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.51■□□□□ 0.23
COL6A6A6NMZ7 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.5■□□□□ 0.23
COL6A6A6NMZ7 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms