Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.21■■□□□ 1.47
PCDHGA1Q9Y5H4 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHGA1Q9Y5H4 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
PCDHGA1Q9Y5H4 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHGA1Q9Y5H4 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHGA1Q9Y5H4 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHGA1Q9Y5H4 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA1Q9Y5H4 DUX4L9-201ENST00000449051 1259 ntBASIC24.2■■□□□ 1.46
PCDHGA1Q9Y5H4 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
PCDHGA1Q9Y5H4 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA1Q9Y5H4 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHGA1Q9Y5H4 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC24.19■■□□□ 1.46
PCDHGA1Q9Y5H4 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHGA1Q9Y5H4 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
PCDHGA1Q9Y5H4 BHLHE23-202ENST00000612929 1109 ntBASIC24.19■■□□□ 1.46
PCDHGA1Q9Y5H4 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHGA1Q9Y5H4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC24.18■■□□□ 1.46
PCDHGA1Q9Y5H4 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHGA1Q9Y5H4 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
PCDHGA1Q9Y5H4 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHGA1Q9Y5H4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.18■■□□□ 1.46
PCDHGA1Q9Y5H4 ST7-205ENST00000393446 2114 ntTSL 5 BASIC24.17■■□□□ 1.46
PCDHGA1Q9Y5H4 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHGA1Q9Y5H4 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC24.17■■□□□ 1.46
PCDHGA1Q9Y5H4 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHGA1Q9Y5H4 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.16■■□□□ 1.46
PCDHGA1Q9Y5H4 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC24.16■■□□□ 1.46
PCDHGA1Q9Y5H4 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC24.15■■□□□ 1.46
PCDHGA1Q9Y5H4 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHGA1Q9Y5H4 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHGA1Q9Y5H4 AC093536.1-201ENST00000569153 554 ntBASIC24.15■■□□□ 1.46
PCDHGA1Q9Y5H4 RAP2CP1-202ENST00000605179 643 ntBASIC24.15■■□□□ 1.46
PCDHGA1Q9Y5H4 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PCDHGA1Q9Y5H4 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PCDHGA1Q9Y5H4 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHGA1Q9Y5H4 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24.14■■□□□ 1.45
PCDHGA1Q9Y5H4 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 AC010980.1-201ENST00000587192 1142 ntBASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 ST7-202ENST00000323984 2142 ntTSL 5 BASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 ST7-207ENST00000393449 2127 ntTSL 5 BASIC24.13■■□□□ 1.45
PCDHGA1Q9Y5H4 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC24.12■■□□□ 1.45
PCDHGA1Q9Y5H4 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.12■■□□□ 1.45
PCDHGA1Q9Y5H4 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHGA1Q9Y5H4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC24.12■■□□□ 1.45
PCDHGA1Q9Y5H4 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.12■■□□□ 1.45
PCDHGA1Q9Y5H4 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHGA1Q9Y5H4 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC24.11■■□□□ 1.45
PCDHGA1Q9Y5H4 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC24.1■■□□□ 1.45
PCDHGA1Q9Y5H4 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.1■■□□□ 1.45
PCDHGA1Q9Y5H4 MIR3960-201ENST00000583311 91 ntBASIC24.1■■□□□ 1.45
PCDHGA1Q9Y5H4 MIR6765-201ENST00000614092 87 ntBASIC24.1■■□□□ 1.45
PCDHGA1Q9Y5H4 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHGA1Q9Y5H4 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.1■■□□□ 1.45
PCDHGA1Q9Y5H4 YBX1P4-201ENST00000392794 808 ntBASIC24.09■■□□□ 1.45
PCDHGA1Q9Y5H4 AL592295.1-201ENST00000400984 884 ntBASIC24.09■■□□□ 1.45
PCDHGA1Q9Y5H4 AC139795.1-202ENST00000500444 432 ntBASIC24.09■■□□□ 1.45
PCDHGA1Q9Y5H4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA1Q9Y5H4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA1Q9Y5H4 AC009299.2-201ENST00000482477 511 ntBASIC24.08■■□□□ 1.45
PCDHGA1Q9Y5H4 SPCS2P3-201ENST00000500401 656 ntBASIC24.08■■□□□ 1.45
PCDHGA1Q9Y5H4 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC24.08■■□□□ 1.44
PCDHGA1Q9Y5H4 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC24.07■■□□□ 1.44
PCDHGA1Q9Y5H4 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHGA1Q9Y5H4 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.07■■□□□ 1.44
PCDHGA1Q9Y5H4 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHGA1Q9Y5H4 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHGA1Q9Y5H4 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHGA1Q9Y5H4 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
PCDHGA1Q9Y5H4 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHGA1Q9Y5H4 KRT8P33-201ENST00000508125 1423 ntBASIC24.06■■□□□ 1.44
PCDHGA1Q9Y5H4 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHGA1Q9Y5H4 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.05■■□□□ 1.44
PCDHGA1Q9Y5H4 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA1Q9Y5H4 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
PCDHGA1Q9Y5H4 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA1Q9Y5H4 AC100797.4-201ENST00000631653 1827 ntBASIC24.05■■□□□ 1.44
PCDHGA1Q9Y5H4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
PCDHGA1Q9Y5H4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
PCDHGA1Q9Y5H4 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHGA1Q9Y5H4 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHGA1Q9Y5H4 HES6-204ENST00000409182 863 ntTSL 2 BASIC24.04■■□□□ 1.44
PCDHGA1Q9Y5H4 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHGA1Q9Y5H4 AC018755.3-202ENST00000596210 929 ntBASIC24.04■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms