Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.86■■□□□ 1.09
RPS4Y2Q8TD47 AC005559.1-201ENST00000589661 871 ntBASIC21.86■■□□□ 1.09
RPS4Y2Q8TD47 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RPS4Y2Q8TD47 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.86■■□□□ 1.09
RPS4Y2Q8TD47 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.85■■□□□ 1.09
RPS4Y2Q8TD47 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.85■■□□□ 1.09
RPS4Y2Q8TD47 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RPS4Y2Q8TD47 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RPS4Y2Q8TD47 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
RPS4Y2Q8TD47 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RPS4Y2Q8TD47 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RPS4Y2Q8TD47 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RPS4Y2Q8TD47 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RPS4Y2Q8TD47 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RPS4Y2Q8TD47 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RPS4Y2Q8TD47 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
RPS4Y2Q8TD47 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
RPS4Y2Q8TD47 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
RPS4Y2Q8TD47 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.82■■□□□ 1.08
RPS4Y2Q8TD47 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
RPS4Y2Q8TD47 AP004609.3-201ENST00000610705 1884 ntBASIC21.81■■□□□ 1.08
RPS4Y2Q8TD47 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.81■■□□□ 1.08
RPS4Y2Q8TD47 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.81■■□□□ 1.08
RPS4Y2Q8TD47 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPS4Y2Q8TD47 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPS4Y2Q8TD47 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPS4Y2Q8TD47 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPS4Y2Q8TD47 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPS4Y2Q8TD47 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RPS4Y2Q8TD47 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.79■■□□□ 1.08
RPS4Y2Q8TD47 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
RPS4Y2Q8TD47 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RPS4Y2Q8TD47 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RPS4Y2Q8TD47 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RPS4Y2Q8TD47 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.78■■□□□ 1.08
RPS4Y2Q8TD47 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RPS4Y2Q8TD47 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RPS4Y2Q8TD47 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RPS4Y2Q8TD47 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RPS4Y2Q8TD47 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RPS4Y2Q8TD47 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.77■■□□□ 1.07
RPS4Y2Q8TD47 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
RPS4Y2Q8TD47 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
RPS4Y2Q8TD47 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RPS4Y2Q8TD47 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.76■■□□□ 1.07
RPS4Y2Q8TD47 AP006261.1-201ENST00000584783 668 ntBASIC21.76■■□□□ 1.07
RPS4Y2Q8TD47 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
RPS4Y2Q8TD47 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RPS4Y2Q8TD47 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
RPS4Y2Q8TD47 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.75■■□□□ 1.07
RPS4Y2Q8TD47 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RPS4Y2Q8TD47 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RPS4Y2Q8TD47 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RPS4Y2Q8TD47 AC142472.1-201ENST00000612013 1741 ntBASIC21.75■■□□□ 1.07
RPS4Y2Q8TD47 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RPS4Y2Q8TD47 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.74■■□□□ 1.07
RPS4Y2Q8TD47 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.74■■□□□ 1.07
RPS4Y2Q8TD47 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.74■■□□□ 1.07
RPS4Y2Q8TD47 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RPS4Y2Q8TD47 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.73■■□□□ 1.07
RPS4Y2Q8TD47 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
RPS4Y2Q8TD47 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RPS4Y2Q8TD47 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
RPS4Y2Q8TD47 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
RPS4Y2Q8TD47 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.72■■□□□ 1.07
RPS4Y2Q8TD47 DUX4L28-201ENST00000623687 678 ntBASIC21.72■■□□□ 1.07
RPS4Y2Q8TD47 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
RPS4Y2Q8TD47 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.71■■□□□ 1.07
RPS4Y2Q8TD47 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RPS4Y2Q8TD47 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
RPS4Y2Q8TD47 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.7■■□□□ 1.06
RPS4Y2Q8TD47 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
RPS4Y2Q8TD47 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
RPS4Y2Q8TD47 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RPS4Y2Q8TD47 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPS4Y2Q8TD47 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPS4Y2Q8TD47 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC21.69■■□□□ 1.06
RPS4Y2Q8TD47 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
RPS4Y2Q8TD47 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPS4Y2Q8TD47 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms