Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 RP9P-202ENST00000450133 1212 ntBASIC25.91■■□□□ 1.74
SLC44A3Q8N4M1 AC010980.1-201ENST00000587192 1142 ntBASIC25.91■■□□□ 1.74
SLC44A3Q8N4M1 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC25.91■■□□□ 1.74
SLC44A3Q8N4M1 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SLC44A3Q8N4M1 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.9■■□□□ 1.74
SLC44A3Q8N4M1 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
SLC44A3Q8N4M1 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SLC44A3Q8N4M1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.9■■□□□ 1.74
SLC44A3Q8N4M1 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
SLC44A3Q8N4M1 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.9■■□□□ 1.74
SLC44A3Q8N4M1 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC25.89■■□□□ 1.74
SLC44A3Q8N4M1 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SLC44A3Q8N4M1 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SLC44A3Q8N4M1 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SLC44A3Q8N4M1 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
SLC44A3Q8N4M1 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.89■■□□□ 1.74
SLC44A3Q8N4M1 AC074183.2-201ENST00000623112 922 ntBASIC25.89■■□□□ 1.74
SLC44A3Q8N4M1 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
SLC44A3Q8N4M1 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
SLC44A3Q8N4M1 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC25.88■■□□□ 1.73
SLC44A3Q8N4M1 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SLC44A3Q8N4M1 AP004833.2-201ENST00000532228 1454 ntBASIC25.88■■□□□ 1.73
SLC44A3Q8N4M1 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
SLC44A3Q8N4M1 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SLC44A3Q8N4M1 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
SLC44A3Q8N4M1 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
SLC44A3Q8N4M1 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SLC44A3Q8N4M1 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC25.87■■□□□ 1.73
SLC44A3Q8N4M1 AC093536.1-201ENST00000569153 554 ntBASIC25.87■■□□□ 1.73
SLC44A3Q8N4M1 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
SLC44A3Q8N4M1 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
SLC44A3Q8N4M1 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC25.86■■□□□ 1.73
SLC44A3Q8N4M1 SPCS2P3-201ENST00000500401 656 ntBASIC25.86■■□□□ 1.73
SLC44A3Q8N4M1 RAP2CP1-202ENST00000605179 643 ntBASIC25.86■■□□□ 1.73
SLC44A3Q8N4M1 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
SLC44A3Q8N4M1 KRT8P33-201ENST00000508125 1423 ntBASIC25.86■■□□□ 1.73
SLC44A3Q8N4M1 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
SLC44A3Q8N4M1 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SLC44A3Q8N4M1 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SLC44A3Q8N4M1 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SLC44A3Q8N4M1 AC100797.4-201ENST00000631653 1827 ntBASIC25.84■■□□□ 1.73
SLC44A3Q8N4M1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SLC44A3Q8N4M1 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC25.84■■□□□ 1.73
SLC44A3Q8N4M1 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC25.84■■□□□ 1.73
SLC44A3Q8N4M1 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SLC44A3Q8N4M1 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SLC44A3Q8N4M1 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SLC44A3Q8N4M1 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
SLC44A3Q8N4M1 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
SLC44A3Q8N4M1 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.83■■□□□ 1.73
SLC44A3Q8N4M1 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.83■■□□□ 1.73
SLC44A3Q8N4M1 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC25.82■■□□□ 1.72
SLC44A3Q8N4M1 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
SLC44A3Q8N4M1 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SLC44A3Q8N4M1 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC25.82■■□□□ 1.72
SLC44A3Q8N4M1 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.82■■□□□ 1.72
SLC44A3Q8N4M1 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
SLC44A3Q8N4M1 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SLC44A3Q8N4M1 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC25.81■■□□□ 1.72
SLC44A3Q8N4M1 AC009299.2-201ENST00000482477 511 ntBASIC25.81■■□□□ 1.72
SLC44A3Q8N4M1 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SLC44A3Q8N4M1 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.81■■□□□ 1.72
SLC44A3Q8N4M1 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC25.81■■□□□ 1.72
SLC44A3Q8N4M1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.8■■□□□ 1.72
SLC44A3Q8N4M1 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SLC44A3Q8N4M1 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SLC44A3Q8N4M1 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
SLC44A3Q8N4M1 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SLC44A3Q8N4M1 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SLC44A3Q8N4M1 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SLC44A3Q8N4M1 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.8■■□□□ 1.72
SLC44A3Q8N4M1 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SLC44A3Q8N4M1 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
SLC44A3Q8N4M1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.79■■□□□ 1.72
SLC44A3Q8N4M1 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SLC44A3Q8N4M1 AC139795.1-202ENST00000500444 432 ntBASIC25.79■■□□□ 1.72
SLC44A3Q8N4M1 AC103834.1-201ENST00000520383 144 ntBASIC25.79■■□□□ 1.72
SLC44A3Q8N4M1 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SLC44A3Q8N4M1 BEX3-202ENST00000372634 753 ntTSL 2 BASIC25.78■■□□□ 1.72
SLC44A3Q8N4M1 YBX1P4-201ENST00000392794 808 ntBASIC25.78■■□□□ 1.72
SLC44A3Q8N4M1 MTURN-203ENST00000409688 843 ntTSL 2 BASIC25.78■■□□□ 1.72
SLC44A3Q8N4M1 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.78■■□□□ 1.72
SLC44A3Q8N4M1 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
SLC44A3Q8N4M1 MIR6765-201ENST00000614092 87 ntBASIC25.78■■□□□ 1.72
SLC44A3Q8N4M1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SLC44A3Q8N4M1 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.78■■□□□ 1.72
SLC44A3Q8N4M1 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.77■■□□□ 1.72
SLC44A3Q8N4M1 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SLC44A3Q8N4M1 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SLC44A3Q8N4M1 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC25.77■■□□□ 1.72
SLC44A3Q8N4M1 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
SLC44A3Q8N4M1 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.77■■□□□ 1.72
SLC44A3Q8N4M1 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SLC44A3Q8N4M1 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.76■■□□□ 1.71
SLC44A3Q8N4M1 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.76■■□□□ 1.71
SLC44A3Q8N4M1 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SLC44A3Q8N4M1 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC25.76■■□□□ 1.71
SLC44A3Q8N4M1 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SLC44A3Q8N4M1 HES6-204ENST00000409182 863 ntTSL 2 BASIC25.75■■□□□ 1.71
SLC44A3Q8N4M1 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC25.75■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms