Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28AQ8IWP9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC28AQ8IWP9 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC28AQ8IWP9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC28AQ8IWP9 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CCDC28AQ8IWP9 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC28AQ8IWP9 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28AQ8IWP9 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CCDC28AQ8IWP9 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
CCDC28AQ8IWP9 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28AQ8IWP9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC28AQ8IWP9 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC28AQ8IWP9 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC28AQ8IWP9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC28AQ8IWP9 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CCDC28AQ8IWP9 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC28AQ8IWP9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC28AQ8IWP9 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC28AQ8IWP9 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC28AQ8IWP9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC28AQ8IWP9 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28AQ8IWP9 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28AQ8IWP9 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28AQ8IWP9 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC28AQ8IWP9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC28AQ8IWP9 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC28AQ8IWP9 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC28AQ8IWP9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC28AQ8IWP9 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC28AQ8IWP9 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC28AQ8IWP9 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC28AQ8IWP9 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC28AQ8IWP9 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC28AQ8IWP9 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28AQ8IWP9 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.63■□□□□ 0.89
CCDC28AQ8IWP9 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28AQ8IWP9 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CCDC28AQ8IWP9 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28AQ8IWP9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28AQ8IWP9 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CCDC28AQ8IWP9 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28AQ8IWP9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28AQ8IWP9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28AQ8IWP9 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28AQ8IWP9 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28AQ8IWP9 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28AQ8IWP9 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28AQ8IWP9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28AQ8IWP9 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.6■□□□□ 0.89
CCDC28AQ8IWP9 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC28AQ8IWP9 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28AQ8IWP9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28AQ8IWP9 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28AQ8IWP9 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28AQ8IWP9 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC28AQ8IWP9 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC28AQ8IWP9 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC28AQ8IWP9 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC28AQ8IWP9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
CCDC28AQ8IWP9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28AQ8IWP9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC28AQ8IWP9 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28AQ8IWP9 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC28AQ8IWP9 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC28AQ8IWP9 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28AQ8IWP9 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28AQ8IWP9 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28AQ8IWP9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28AQ8IWP9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28AQ8IWP9 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCDC28AQ8IWP9 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28AQ8IWP9 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28AQ8IWP9 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28AQ8IWP9 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 AL135925.1-201ENST00000605920 1701 ntBASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC28AQ8IWP9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28AQ8IWP9 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28AQ8IWP9 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28AQ8IWP9 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28AQ8IWP9 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28AQ8IWP9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28AQ8IWP9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC28AQ8IWP9 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms