Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL1P09341 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.3■□□□□ 0.68
CXCL1P09341 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL1P09341 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC19.3■□□□□ 0.68
CXCL1P09341 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL1P09341 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CXCL1P09341 DUSP8P4-201ENST00000399538 1761 ntBASIC19.29■□□□□ 0.68
CXCL1P09341 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CXCL1P09341 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CXCL1P09341 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CXCL1P09341 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CXCL1P09341 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL1P09341 ERN1-208ENST00000606895 2068 ntBASIC19.28■□□□□ 0.68
CXCL1P09341 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.28■□□□□ 0.68
CXCL1P09341 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CXCL1P09341 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CXCL1P09341 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CXCL1P09341 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CXCL1P09341 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CXCL1P09341 AC079834.2-201ENST00000609776 1949 ntBASIC19.27■□□□□ 0.67
CXCL1P09341 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CXCL1P09341 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL1P09341 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL1P09341 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CXCL1P09341 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CXCL1P09341 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CXCL1P09341 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC19.25■□□□□ 0.67
CXCL1P09341 WASH5P-204ENST00000632292 975 ntBASIC19.25■□□□□ 0.67
CXCL1P09341 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CXCL1P09341 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL1P09341 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL1P09341 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL1P09341 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL1P09341 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL1P09341 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL1P09341 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL1P09341 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL1P09341 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL1P09341 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.23■□□□□ 0.67
CXCL1P09341 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL1P09341 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL1P09341 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL1P09341 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL1P09341 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL1P09341 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL1P09341 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL1P09341 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL1P09341 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL1P09341 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CXCL1P09341 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL1P09341 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL1P09341 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL1P09341 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL1P09341 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL1P09341 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CXCL1P09341 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CXCL1P09341 AC068473.5-201ENST00000616428 2072 ntBASIC19.19■□□□□ 0.66
CXCL1P09341 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL1P09341 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL1P09341 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC19.18■□□□□ 0.66
CXCL1P09341 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL1P09341 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL1P09341 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL1P09341 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL1P09341 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.17■□□□□ 0.66
CXCL1P09341 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.17■□□□□ 0.66
CXCL1P09341 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL1P09341 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC19.17■□□□□ 0.66
CXCL1P09341 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL1P09341 AC092803.2-201ENST00000564287 1899 ntBASIC19.17■□□□□ 0.66
CXCL1P09341 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.17■□□□□ 0.66
CXCL1P09341 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CXCL1P09341 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.16■□□□□ 0.66
CXCL1P09341 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CXCL1P09341 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.15■□□□□ 0.66
CXCL1P09341 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CXCL1P09341 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC19.15■□□□□ 0.66
CXCL1P09341 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CXCL1P09341 AP002365.1-201ENST00000603448 772 ntBASIC19.15■□□□□ 0.66
CXCL1P09341 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CXCL1P09341 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CXCL1P09341 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CXCL1P09341 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CXCL1P09341 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.14■□□□□ 0.65
CXCL1P09341 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC19.14■□□□□ 0.65
CXCL1P09341 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CXCL1P09341 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CXCL1P09341 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CXCL1P09341 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
CXCL1P09341 AC010864.1-201ENST00000609407 1511 ntBASIC19.13■□□□□ 0.65
CXCL1P09341 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CXCL1P09341 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CXCL1P09341 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms