Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 MAPK8-201ENST00000360332 5438 ntTSL 1 (best) BASIC8.12□□□□□ -1.111e-6■■■■■ 30.8
SMNDC1O75940 MAPK8-214ENST00000471272 656 ntTSL 57.4□□□□□ -1.221e-6■■■■■ 30.8
SMNDC1O75940 MAPK8-213ENST00000469879 537 ntTSL 55.67□□□□□ -1.51e-6■■■■■ 30.8
SMNDC1O75940 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.927e-11■■■■■ 30.7
SMNDC1O75940 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.02■□□□□ 0.87e-11■■■■■ 30.7
SMNDC1O75940 SNRNP70-204ENST00000595231 1673 ntTSL 1 (best)19.96■□□□□ 0.797e-11■■■■■ 30.7
SMNDC1O75940 SNRNP70-209ENST00000601065 1757 ntTSL 319.78■□□□□ 0.767e-11■■■■■ 30.7
SMNDC1O75940 SNRNP70-202ENST00000401730 3144 ntTSL 217.73■□□□□ 0.437e-11■■■■■ 30.7
SMNDC1O75940 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.092e-8■■■■■ 30.6
SMNDC1O75940 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.76■■□□□ 1.072e-8■■■■■ 30.6
SMNDC1O75940 COMT-210ENST00000467943 546 ntTSL 221.73■■□□□ 1.072e-8■■■■■ 30.6
SMNDC1O75940 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.18■□□□□ 0.982e-8■■■■■ 30.6
SMNDC1O75940 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.752e-8■■■■■ 30.6
SMNDC1O75940 COMT-207ENST00000412786 871 ntAPPRIS ALT2 TSL 214.53□□□□□ -0.082e-8■■■■■ 30.6
SMNDC1O75940 COMT-201ENST00000207636 1319 ntTSL 513.71□□□□□ -0.212e-8■■■■■ 30.6
SMNDC1O75940 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.212e-8■■■■■ 30.6
SMNDC1O75940 SNORD88B-201ENST00000408454 91 ntBASIC11.64□□□□□ -0.552e-8■■■■■ 30.6
SMNDC1O75940 KIF2C-203ENST00000423289 320 ntTSL 56.15□□□□□ -1.422e-7■■■■■ 30.6
SMNDC1O75940 RNU2-70P-201ENST00000410718 179 ntBASIC3.47□□□□□ -1.852e-8■■■■■ 30.6
SMNDC1O75940 TSR1-202ENST00000571806 794 ntTSL 214.05□□□□□ -0.161e-6■■■■■ 30.6
SMNDC1O75940 TSR1-205ENST00000576202 573 ntTSL 211.83□□□□□ -0.521e-6■■■■■ 30.6
SMNDC1O75940 LRRC45-206ENST00000583383 840 ntTSL 321.91■■□□□ 1.14e-7■■■■■ 30.5
SMNDC1O75940 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.984e-7■■■■■ 30.5
SMNDC1O75940 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.38■□□□□ 0.854e-7■■■■■ 30.5
SMNDC1O75940 RPL22-206ENST00000480661 2279 ntTSL 1 (best)19.92■□□□□ 0.784e-13■■■■■ 30.5
SMNDC1O75940 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.38■□□□□ 0.694e-7■■■■■ 30.5
SMNDC1O75940 RPL22-204ENST00000465387 508 ntTSL 219.36■□□□□ 0.694e-13■■■■■ 30.5
SMNDC1O75940 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.28■□□□□ 0.684e-7■■■■■ 30.5
SMNDC1O75940 PTP4A3-205ENST00000523147 558 ntTSL 518.91■□□□□ 0.624e-7■■■■■ 30.5
SMNDC1O75940 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.514e-7■■■■■ 30.5
SMNDC1O75940 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.25■□□□□ 0.514e-7■■■■■ 30.5
SMNDC1O75940 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.54e-7■■■■■ 30.5
SMNDC1O75940 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.444e-7■■■■■ 30.5
SMNDC1O75940 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.384e-7■■■■■ 30.5
SMNDC1O75940 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.364e-7■■■■■ 30.5
SMNDC1O75940 PABPC1L-216ENST00000490798 1384 ntTSL 317.21■□□□□ 0.354e-7■■■■■ 30.5
SMNDC1O75940 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.327e-10■■■■■ 30.5
SMNDC1O75940 ERF-203ENST00000593944 555 ntTSL 416.83■□□□□ 0.284e-7■■■■■ 30.5
SMNDC1O75940 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.244e-7■■■■■ 30.5
SMNDC1O75940 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.184e-7■■■■■ 30.5
SMNDC1O75940 STXBP3-202ENST00000469338 294 ntTSL 216■□□□□ 0.154e-7■■■■■ 30.5
SMNDC1O75940 TONSL-202ENST00000497613 6607 ntTSL 215.52■□□□□ 0.076e-8■■■■■ 30.5
SMNDC1O75940 STXBP3-204ENST00000483586 561 ntTSL 215.03■□□□□ -04e-7■■■■■ 30.5
SMNDC1O75940 RPL22-203ENST00000465335 806 ntTSL 314.42□□□□□ -0.14e-13■■■■■ 30.5
SMNDC1O75940 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC14.38□□□□□ -0.114e-7■■■■■ 30.5
SMNDC1O75940 LRRC45-202ENST00000577638 730 ntTSL 214.33□□□□□ -0.124e-7■■■■■ 30.5
SMNDC1O75940 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.156e-8■■■■■ 30.5
SMNDC1O75940 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.194e-7■■■■■ 30.5
SMNDC1O75940 DIDO1-202ENST00000354665 2707 ntTSL 1 (best) BASIC13.53□□□□□ -0.244e-7■■■■■ 30.5
SMNDC1O75940 SLC5A6-215ENST00000476319 842 ntTSL 313.28□□□□□ -0.287e-10■■■■■ 30.5
SMNDC1O75940 SLC5A6-217ENST00000488743 3174 ntTSL 213.28□□□□□ -0.287e-10■■■■■ 30.5
SMNDC1O75940 DIDO1-205ENST00000370371 2833 ntTSL 1 (best) BASIC13.19□□□□□ -0.34e-7■■■■■ 30.5
SMNDC1O75940 SLC5A6-201ENST00000310574 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.327e-10■■■■■ 30.5
SMNDC1O75940 COBLL1-202ENST00000375458 9367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.364e-7■■■■■ 30.5
SMNDC1O75940 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.374e-7■■■■■ 30.5
SMNDC1O75940 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.394e-7■■■■■ 30.5
SMNDC1O75940 PRRC2C-208ENST00000476522 1931 ntTSL 512.56□□□□□ -0.44e-7■■■■■ 30.5
SMNDC1O75940 RPL22-201ENST00000234875 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.614e-13■■■■■ 30.5
SMNDC1O75940 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.634e-7■■■■■ 30.5
SMNDC1O75940 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.645e-8■■■■■ 30.5
SMNDC1O75940 PABPC1L-211ENST00000476056 1214 ntTSL 510.54□□□□□ -0.724e-7■■■■■ 30.5
SMNDC1O75940 ATP11A-205ENST00000419448 435 ntTSL 310.35□□□□□ -0.754e-7■■■■■ 30.5
SMNDC1O75940 PRRC2C-203ENST00000392078 1919 ntTSL 1 (best) BASIC10.06□□□□□ -0.84e-7■■■■■ 30.5
SMNDC1O75940 DIDO1-206ENST00000395340 7551 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.814e-7■■■■■ 30.5
SMNDC1O75940 COBLL1-204ENST00000409184 4636 ntAPPRIS ALT2 TSL 1 (best)9.89□□□□□ -0.834e-7■■■■■ 30.5
SMNDC1O75940 PABPC1L-213ENST00000481196 488 ntTSL 59.52□□□□□ -0.894e-7■■■■■ 30.5
SMNDC1O75940 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC8.77□□□□□ -1.014e-7■■■■■ 30.5
SMNDC1O75940 COBLL1-221ENST00000493868 6332 ntTSL 1 (best)8.76□□□□□ -1.014e-7■■■■■ 30.5
SMNDC1O75940 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC8.38□□□□□ -1.075e-8■■■■■ 30.5
SMNDC1O75940 RPL22-208ENST00000497965 786 ntTSL 2 BASIC7.58□□□□□ -1.24e-13■■■■■ 30.5
SMNDC1O75940 ERF-205ENST00000595941 227 ntTSL 47.58□□□□□ -1.24e-7■■■■■ 30.5
SMNDC1O75940 RPL22-202ENST00000462296 600 ntTSL 37.56□□□□□ -1.24e-13■■■■■ 30.5
SMNDC1O75940 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.275e-8■■■■■ 30.5
SMNDC1O75940 RPL22-205ENST00000471204 524 ntTSL 26.87□□□□□ -1.314e-13■■■■■ 30.5
SMNDC1O75940 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.28■■□□□ 1.482e-8■■■■■ 30.5
SMNDC1O75940 AGAP3-207ENST00000467724 826 ntTSL 517.43■□□□□ 0.382e-8■■■■■ 30.5
SMNDC1O75940 AGAP3-225ENST00000498559 581 ntTSL 216.15■□□□□ 0.182e-8■■■■■ 30.5
SMNDC1O75940 AGAP3-208ENST00000468796 540 ntTSL 47.87□□□□□ -1.152e-8■■■■■ 30.5
SMNDC1O75940 AGAP3-217ENST00000480106 393 ntTSL 27.13□□□□□ -1.272e-8■■■■■ 30.5
SMNDC1O75940 SNORD14D-201ENST00000384390 87 ntBASIC3.65□□□□□ -1.833e-77■■■■■ 30.5
SMNDC1O75940 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.493e-7■■■■■ 30.4
SMNDC1O75940 PLK1-202ENST00000562272 4135 ntTSL 211.96□□□□□ -0.493e-7■■■■■ 30.4
SMNDC1O75940 SNORD111-201ENST00000408139 94 ntBASIC1.8□□□□□ -2.126e-22■■■■■ 30.2
SMNDC1O75940 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.33■■□□□ 1.011e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.871e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.281e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-205ENST00000440514 578 ntTSL 316.11■□□□□ 0.171e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-203ENST00000430038 735 ntTSL 515.37■□□□□ 0.051e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-206ENST00000441580 942 ntTSL 2 BASIC12.61□□□□□ -0.391e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-208ENST00000452047 687 ntTSL 311.2□□□□□ -0.621e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-212ENST00000482251 574 ntTSL 29.46□□□□□ -0.91e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-213ENST00000484112 825 ntTSL 28.97□□□□□ -0.971e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-211ENST00000471455 569 ntTSL 58.27□□□□□ -1.091e-8■■■■■ 30.2
SMNDC1O75940 CPSF4-202ENST00000412686 745 ntTSL 56.88□□□□□ -1.311e-8■■■■■ 30.2
SMNDC1O75940 RNU2-61P-201ENST00000411069 191 ntBASIC4.46□□□□□ -1.71e-8■■■■■ 30.2
SMNDC1O75940 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.573e-21■■■■■ 30.1
SMNDC1O75940 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC10.68□□□□□ -0.73e-21■■■■■ 30.1
SMNDC1O75940 MAEA-209ENST00000506530 5371 ntTSL 220.01■□□□□ 0.792e-6■■■■■ 30
SMNDC1O75940 MAEA-215ENST00000512289 2426 ntTSL 218.66■□□□□ 0.582e-6■■■■■ 30
SMNDC1O75940 SNORD91B-201ENST00000391250 95 nt5.5□□□□□ -1.537e-26■■■■■ 30
Retrieved 100 of 11,362 protein–RNA pairs in 238.6 ms