Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 ESPNP-201ENST00000270691 2015 ntBASIC18.04■□□□□ 0.48
VRK3Q8IV63 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 AC009102.3-201ENST00000623118 1491 ntBASIC18.03■□□□□ 0.48
VRK3Q8IV63 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 MIR149-201ENST00000384879 89 ntBASIC18.03■□□□□ 0.48
VRK3Q8IV63 AK4P3-201ENST00000418260 669 ntBASIC18.03■□□□□ 0.48
VRK3Q8IV63 SPDYE15P-201ENST00000424157 909 ntBASIC18.03■□□□□ 0.48
VRK3Q8IV63 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.03■□□□□ 0.48
VRK3Q8IV63 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VRK3Q8IV63 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VRK3Q8IV63 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.02■□□□□ 0.48
VRK3Q8IV63 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VRK3Q8IV63 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VRK3Q8IV63 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VRK3Q8IV63 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
VRK3Q8IV63 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
VRK3Q8IV63 TSPY5P-201ENST00000426936 936 ntBASIC18.02■□□□□ 0.48
VRK3Q8IV63 KRT18P38-201ENST00000449496 1282 ntBASIC18.02■□□□□ 0.48
VRK3Q8IV63 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.02■□□□□ 0.48
VRK3Q8IV63 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VRK3Q8IV63 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.02■□□□□ 0.48
VRK3Q8IV63 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.02■□□□□ 0.48
VRK3Q8IV63 MIR3180-4-201ENST00000582223 153 ntBASIC18.02■□□□□ 0.48
VRK3Q8IV63 AL031432.5-201ENST00000641059 760 ntBASIC18.02■□□□□ 0.48
VRK3Q8IV63 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VRK3Q8IV63 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
VRK3Q8IV63 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.02■□□□□ 0.47
VRK3Q8IV63 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
VRK3Q8IV63 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VRK3Q8IV63 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
VRK3Q8IV63 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
VRK3Q8IV63 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 RNF152P1-201ENST00000397754 604 ntBASIC18.01■□□□□ 0.47
VRK3Q8IV63 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 RASA4DP-201ENST00000460726 1199 ntBASIC18.01■□□□□ 0.47
VRK3Q8IV63 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
VRK3Q8IV63 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VRK3Q8IV63 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 AC135776.1-201ENST00000319817 2481 ntBASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms