Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.08■□□□□ 0.32
NUP54Q7Z3B4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.08■□□□□ 0.32
NUP54Q7Z3B4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
NUP54Q7Z3B4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
NUP54Q7Z3B4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
NUP54Q7Z3B4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NUP54Q7Z3B4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 PKD1P1-201ENST00000458669 6805 ntBASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 AC104390.1-201ENST00000555663 520 ntBASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 AC024243.1-201ENST00000609234 778 ntBASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.07■□□□□ 0.32
NUP54Q7Z3B4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 DUX4L26-201ENST00000489078 1255 ntBASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 GCSHP2-201ENST00000560971 527 ntBASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 AL441883.1-201ENST00000566170 1045 ntBASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NUP54Q7Z3B4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 ANO7L1-203ENST00000602586 1720 ntBASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 HOMER2P1-201ENST00000455653 964 ntBASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 SEC1P-202ENST00000473944 940 ntBASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 AC063952.2-201ENST00000498792 1227 ntBASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 AL049597.2-201ENST00000565575 961 ntBASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 LINC01238-205ENST00000567549 1107 ntBASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 MIR3180-4-201ENST00000582223 153 ntBASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NUP54Q7Z3B4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms