Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 TSPY7P-201ENST00000431358 1114 ntBASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 MIR4785-201ENST00000585005 73 ntBASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 AC012317.2-201ENST00000623305 2251 ntBASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF111Q6ZNA4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 NUDT16P1-203ENST00000513809 620 ntBASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 MIR4497-201ENST00000583208 89 ntBASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 AC026471.5-201ENST00000615068 467 ntBASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
RNF111Q6ZNA4 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 AC108860.2-201ENST00000562760 2183 ntBASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 KRT17P2-201ENST00000300992 1314 ntBASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF111Q6ZNA4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 Z85996.1-201ENST00000494644 937 ntBASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF111Q6ZNA4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms