Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC14.08□□□□□ -0.15
HLA-DMBP28068 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DMBP28068 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DMBP28068 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DMBP28068 AC099343.3-201ENST00000605834 2503 ntBASIC14.08□□□□□ -0.15
HLA-DMBP28068 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 FAM207BP-201ENST00000447172 505 ntBASIC14.08□□□□□ -0.16
HLA-DMBP28068 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 CKBP1-201ENST00000565489 1086 ntBASIC14.08□□□□□ -0.16
HLA-DMBP28068 AF186192.3-201ENST00000583427 947 ntBASIC14.08□□□□□ -0.16
HLA-DMBP28068 RPS15-203ENST00000586096 570 ntTSL 2 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 AL031985.4-201ENST00000642138 673 ntBASIC14.08□□□□□ -0.16
HLA-DMBP28068 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DMBP28068 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DMBP28068 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DMBP28068 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC14.07□□□□□ -0.16
HLA-DMBP28068 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.06□□□□□ -0.16
HLA-DMBP28068 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DMBP28068 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DMBP28068 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DMBP28068 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DMBP28068 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DMBP28068 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DMBP28068 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
HLA-DMBP28068 FAM197Y1-201ENST00000421178 764 ntBASIC14.06□□□□□ -0.16
HLA-DMBP28068 AL353807.1-201ENST00000427475 662 ntBASIC14.06□□□□□ -0.16
HLA-DMBP28068 B3GAT3P1-201ENST00000471720 806 ntBASIC14.06□□□□□ -0.16
HLA-DMBP28068 DHDH-203ENST00000522614 776 ntTSL 5 BASIC14.06□□□□□ -0.16
HLA-DMBP28068 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC14.06□□□□□ -0.16
HLA-DMBP28068 MIR4785-201ENST00000585005 73 ntBASIC14.06□□□□□ -0.16
HLA-DMBP28068 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC14.06□□□□□ -0.16
HLA-DMBP28068 AC073195.1-201ENST00000607241 877 ntBASIC14.06□□□□□ -0.16
HLA-DMBP28068 MIR6786-201ENST00000616843 113 ntBASIC14.06□□□□□ -0.16
HLA-DMBP28068 AC130371.2-201ENST00000619443 611 ntBASIC14.06□□□□□ -0.16
HLA-DMBP28068 AC113410.3-201ENST00000623366 203 ntBASIC14.06□□□□□ -0.16
HLA-DMBP28068 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DMBP28068 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HLA-DMBP28068 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DMBP28068 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DMBP28068 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms